RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 MRS2Q9HD23 443 aa22.3■■□□□ 1.16
SHOX-201ENST00000334060 KCNH5Q8NCM2 988 aa22.29■■□□□ 1.16
SHOX-201ENST00000334060 COL18A1P39060 1754 aa22.29■■□□□ 1.16
SHOX-201ENST00000334060 AMPHP49418 695 aa22.28■■□□□ 1.16
SHOX-201ENST00000334060 PRDM11Q9NQV5 511 aa22.27■■□□□ 1.15
SHOX-201ENST00000334060 CAMTA1Q9Y6Y1 1673 aa22.27■■□□□ 1.15
SHOX-201ENST00000334060 CDK12Q9NYV4 1490 aaPredicted RBP22.25■■□□□ 1.15
SHOX-201ENST00000334060 EIF4A2Q14240 407 aaKnown RBP22.25■■□□□ 1.15
SHOX-201ENST00000334060 LMO7Q8WWI1 1683 aa22.24■■□□□ 1.15
SHOX-201ENST00000334060 CPDO75976 1380 aa22.24■■□□□ 1.15
SHOX-201ENST00000334060 FLT4P35916 1363 aa22.24■■□□□ 1.15
SHOX-201ENST00000334060 RGPD2P0DJD1 1756 aa22.24■■□□□ 1.15
SHOX-201ENST00000334060 USHBP1Q8N6Y0 703 aa22.23■■□□□ 1.15
SHOX-201ENST00000334060 IP6K1Q92551 441 aa22.23■■□□□ 1.15
SHOX-201ENST00000334060 IL13P35225 146 aa22.21■■□□□ 1.15
SHOX-201ENST00000334060 FAM9BQ8IZU0 186 aa22.21■■□□□ 1.15
SHOX-201ENST00000334060 C8orf37Q96NL8 207 aa22.21■■□□□ 1.15
SHOX-201ENST00000334060 CCER2I3L3R5 266 aa22.2■■□□□ 1.14
SHOX-201ENST00000334060 AEBP1Q8IUX7 1158 aa22.2■■□□□ 1.14
SHOX-201ENST00000334060 PNISRQ8TF01 805 aaKnown RBP22.2■■□□□ 1.14
SHOX-201ENST00000334060 ILDR1Q86SU0 546 aaPredicted RBP22.19■■□□□ 1.14
SHOX-201ENST00000334060 BTG4Q9NY30 223 aa22.19■■□□□ 1.14
SHOX-201ENST00000334060 ANKRD24Q8TF21 1146 aa22.19■■□□□ 1.14
SHOX-201ENST00000334060 PLCH1Q4KWH8 1693 aa22.19■■□□□ 1.14
SHOX-201ENST00000334060 INSRP06213 1382 aa22.18■■□□□ 1.14
SHOX-201ENST00000334060 U2SURPO15042 1029 aaKnown RBP22.18■■□□□ 1.14
SHOX-201ENST00000334060 STRN4Q9NRL3 753 aa22.18■■□□□ 1.14
SHOX-201ENST00000334060 HMOX1P09601 288 aa22.18■■□□□ 1.14
SHOX-201ENST00000334060 ERBB3P21860 1342 aa22.17■■□□□ 1.14
SHOX-201ENST00000334060 SPATA31A6Q5VVP1 1343 aa22.17■■□□□ 1.14
SHOX-201ENST00000334060 COL5A2P05997 1499 aaPredicted RBP22.17■■□□□ 1.14
SHOX-201ENST00000334060 DIAPH1O60610 1272 aaKnown RBP22.17■■□□□ 1.14
SHOX-201ENST00000334060 NBPF6Q5VWK0 638 aa22.17■■□□□ 1.14
SHOX-201ENST00000334060 NBPF4Q96M43 638 aa22.17■■□□□ 1.14
SHOX-201ENST00000334060 ADAMTS8Q9UP79 889 aa22.17■■□□□ 1.14
SHOX-201ENST00000334060 RTL1A6NKG5 1358 aa22.17■■□□□ 1.14
SHOX-201ENST00000334060 EYA1Q99502 592 aa22.16■■□□□ 1.14
SHOX-201ENST00000334060 LARP1Q6PKG0 1096 aaKnown RBP22.16■■□□□ 1.14
SHOX-201ENST00000334060 RGPD1P0DJD0 1748 aa22.15■■□□□ 1.14
SHOX-201ENST00000334060 CCDC146Q8IYE0 955 aa22.14■■□□□ 1.14
SHOX-201ENST00000334060 COL14A1Q05707 1796 aaKnown RBP22.14■■□□□ 1.14
SHOX-201ENST00000334060 CFAP53Q96M91 514 aa22.14■■□□□ 1.13
SHOX-201ENST00000334060 SLIT2O94813 1529 aa22.12■■□□□ 1.13
SHOX-201ENST00000334060 U2AF1L5P0DN76 240 aaPredicted RBP22.12■■□□□ 1.13
SHOX-201ENST00000334060 U2AF1Q01081 240 aaKnown RBP eCLIP22.12■■□□□ 1.13
SHOX-201ENST00000334060 BLMP54132 1417 aaPredicted RBP22.12■■□□□ 1.13
SHOX-201ENST00000334060 NRAPQ86VF7 1730 aa22.12■■□□□ 1.13
SHOX-201ENST00000334060 NGLY1Q96IV0 654 aa22.12■■□□□ 1.13
SHOX-201ENST00000334060 USP35Q9P2H5 1018 aa22.12■■□□□ 1.13
SHOX-201ENST00000334060 BCL9LQ86UU0 1499 aa22.11■■□□□ 1.13
SHOX-201ENST00000334060 KIF24Q5T7B8 1368 aa22.11■■□□□ 1.13
SHOX-201ENST00000334060 MEX3CQ5U5Q3 659 aaKnown RBP22.1■■□□□ 1.13
SHOX-201ENST00000334060 CSB-PGBD3P0DP91 1061 aa22.1■■□□□ 1.13
SHOX-201ENST00000334060 SULT6B1Q6IMI4 303 aa22.09■■□□□ 1.13
SHOX-201ENST00000334060 NLRP2Q9NX02 1062 aa22.09■■□□□ 1.13
SHOX-201ENST00000334060 IGSF1Q8N6C5 1336 aa22.08■■□□□ 1.13
SHOX-201ENST00000334060 FAM208AQ9UK61 1670 aaKnown RBP22.08■■□□□ 1.13
SHOX-201ENST00000334060 AFF2P51816 1311 aa22.07■■□□□ 1.12
SHOX-201ENST00000334060 WDR17Q8IZU2 1322 aa22.07■■□□□ 1.12
SHOX-201ENST00000334060 WDR43Q15061 677 aaKnown RBP eCLIP22.07■■□□□ 1.12
SHOX-201ENST00000334060 YTHDC1Q96MU7 727 aaKnown RBP22.07■■□□□ 1.12
SHOX-201ENST00000334060 ABCC6O95255 1503 aa22.06■■□□□ 1.12
SHOX-201ENST00000334060 TOM1L2Q6ZVM7 507 aa22.06■■□□□ 1.12
SHOX-201ENST00000334060 PHACTR3Q96KR7 559 aa22.06■■□□□ 1.12
SHOX-201ENST00000334060 RSPH6AQ9H0K4 717 aa22.06■■□□□ 1.12
SHOX-201ENST00000334060 EVA1CP58658 441 aa22.05■■□□□ 1.12
SHOX-201ENST00000334060 PRKAR2BP31323 418 aa22.04■■□□□ 1.12
SHOX-201ENST00000334060 FNBP4Q8N3X1 1017 aaPredicted RBP22.04■■□□□ 1.12
SHOX-201ENST00000334060 PLEKHF1Q96S99 279 aa22.03■■□□□ 1.12
SHOX-201ENST00000334060 USP21Q9UK80 565 aa22.03■■□□□ 1.12
SHOX-201ENST00000334060 MEGF6O75095 1541 aa22.03■■□□□ 1.12
SHOX-201ENST00000334060 RRP7AQ9Y3A4 280 aaKnown RBP22.02■■□□□ 1.12
SHOX-201ENST00000334060 SALL2Q9Y467 1007 aaPredicted RBP22.02■■□□□ 1.12
SHOX-201ENST00000334060 NWD2Q9ULI1 1742 aa22.02■■□□□ 1.11
SHOX-201ENST00000334060 UNC5CLQ8IV45 518 aa22.01■■□□□ 1.11
SHOX-201ENST00000334060 NUDCQ9Y266 331 aa22.01■■□□□ 1.11
SHOX-201ENST00000334060 NCAPD2Q15021 1401 aa22.01■■□□□ 1.11
SHOX-201ENST00000334060 KDRP35968 1356 aa22.01■■□□□ 1.11
SHOX-201ENST00000334060 CRB1P82279 1406 aa22■■□□□ 1.11
SHOX-201ENST00000334060 RGS17Q9UGC6 210 aaPredicted RBP22■■□□□ 1.11
SHOX-201ENST00000334060 CCDC9Q9Y3X0 531 aaKnown RBP21.99■■□□□ 1.11
SHOX-201ENST00000334060 SPATA31A1Q5TZJ5 1347 aa21.97■■□□□ 1.11
SHOX-201ENST00000334060 APAF1O14727 1248 aa21.97■■□□□ 1.11
SHOX-201ENST00000334060 NEUROD2Q15784 382 aa21.96■■□□□ 1.11
SHOX-201ENST00000334060 CARD10Q9BWT7 1032 aa21.96■■□□□ 1.11
SHOX-201ENST00000334060 GLI3P10071 1580 aa21.96■■□□□ 1.11
SHOX-201ENST00000334060 SPATA31A5Q5VU36 1347 aa21.96■■□□□ 1.11
SHOX-201ENST00000334060 SPATA31A7Q8IWB4 1347 aa21.96■■□□□ 1.11
SHOX-201ENST00000334060 FCHSD2O94868 740 aa21.94■■□□□ 1.1
SHOX-201ENST00000334060 MTHFSDQ2M296 383 aaKnown RBP21.94■■□□□ 1.1
SHOX-201ENST00000334060 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.93■■□□□ 1.1
SHOX-201ENST00000334060 FAM98CQ17RN3 349 aaKnown RBP21.93■■□□□ 1.1
SHOX-201ENST00000334060 TCP11L2Q8N4U5 519 aa21.93■■□□□ 1.1
SHOX-201ENST00000334060 ATRNO75882 1429 aa21.93■■□□□ 1.1
SHOX-201ENST00000334060 CENPBP07199 599 aaPredicted RBP21.92■■□□□ 1.1
SHOX-201ENST00000334060 VPS72Q15906 364 aa21.92■■□□□ 1.1
SHOX-201ENST00000334060 RUNDC1Q96C34 613 aa21.92■■□□□ 1.1
SHOX-201ENST00000334060 DISP2A7MBM2 1401 aa21.91■■□□□ 1.1
SHOX-201ENST00000334060 QTRT2Q9H974 415 aaKnown RBP21.91■■□□□ 1.1
SHOX-201ENST00000334060 EP400Q96L91 3159 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms