RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 BAZ2BQ9UIF8 2168 aaKnown RBP8.35□□□□□ -1.07
SMC1A-201ENST00000322213 DAPK1P53355 1430 aa8.35□□□□□ -1.07
SMC1A-201ENST00000322213 CCDC27Q2M243 656 aa8.35□□□□□ -1.07
SMC1A-201ENST00000322213 CNTROBQ8N137 903 aa8.35□□□□□ -1.07
SMC1A-201ENST00000322213 SDF4Q9BRK5 362 aa8.35□□□□□ -1.07
SMC1A-201ENST00000322213 RALGAPBQ86X10 1494 aa8.35□□□□□ -1.07
SMC1A-201ENST00000322213 SHTN1A0MZ66 631 aa8.35□□□□□ -1.07
SMC1A-201ENST00000322213 CAVIN2O95810 425 aa8.35□□□□□ -1.07
SMC1A-201ENST00000322213 LUZP1Q86V48 1076 aa8.35□□□□□ -1.07
SMC1A-201ENST00000322213 ZNF396Q96N95 335 aaPredicted RBP8.35□□□□□ -1.07
SMC1A-201ENST00000322213 ANKRD50Q9ULJ7 1429 aa8.35□□□□□ -1.07
SMC1A-201ENST00000322213 ARHGEF12Q9NZN5 1544 aa8.35□□□□□ -1.07
SMC1A-201ENST00000322213 TRIM29Q14134 588 aa8.35□□□□□ -1.07
SMC1A-201ENST00000322213 GPRASP1Q5JY77 1395 aa8.35□□□□□ -1.07
SMC1A-201ENST00000322213 TULP1O00294 542 aaPredicted RBP8.35□□□□□ -1.07
SMC1A-201ENST00000322213 ZRSR2Q15696 482 aaKnown RBP8.35□□□□□ -1.07
SMC1A-201ENST00000322213 TTLL5Q6EMB2 1281 aa8.35□□□□□ -1.07
SMC1A-201ENST00000322213 ZKSCAN5Q9Y2L8 839 aa8.35□□□□□ -1.07
SMC1A-201ENST00000322213 ANKRD1Q15327 319 aa8.35□□□□□ -1.07
SMC1A-201ENST00000322213 FBXW7Q969H0 707 aa8.35□□□□□ -1.07
SMC1A-201ENST00000322213 GBP3Q9H0R5 595 aa8.35□□□□□ -1.07
SMC1A-201ENST00000322213 KLHL34Q8N239 644 aa8.34□□□□□ -1.07
SMC1A-201ENST00000322213 ADCY5O95622 1261 aa8.34□□□□□ -1.07
SMC1A-201ENST00000322213 HMGXB3Q12766 1538 aa8.34□□□□□ -1.07
SMC1A-201ENST00000322213 CAMSAP2Q08AD1 1489 aa8.34□□□□□ -1.07
SMC1A-201ENST00000322213 GAPVD1Q14C86 1478 aa8.34□□□□□ -1.07
SMC1A-201ENST00000322213 CCDC171Q6TFL3 1326 aa8.34□□□□□ -1.07
SMC1A-201ENST00000322213 NPM1P06748 294 aaKnown RBP eCLIP8.34□□□□□ -1.07
SMC1A-201ENST00000322213 SYNE3Q6ZMZ3 975 aa8.34□□□□□ -1.07
SMC1A-201ENST00000322213 CCDC91Q7Z6B0 441 aa8.34□□□□□ -1.07
SMC1A-201ENST00000322213 ERCC6Q03468 1493 aa8.34□□□□□ -1.07
SMC1A-201ENST00000322213 POTEB2H3BUK9 544 aa8.34□□□□□ -1.07
SMC1A-201ENST00000322213 NUP62CLQ9H1M0 184 aa8.34□□□□□ -1.07
SMC1A-201ENST00000322213 CCDC102AQ96A19 550 aa8.34□□□□□ -1.07
SMC1A-201ENST00000322213 OGFRQ9NZT2 677 aa8.34□□□□□ -1.07
SMC1A-201ENST00000322213 UVSSAQ2YD98 709 aa8.33□□□□□ -1.08
SMC1A-201ENST00000322213 CFAP45Q9UL16 551 aa8.33□□□□□ -1.08
SMC1A-201ENST00000322213 RAPGEF6Q8TEU7 1601 aa8.33□□□□□ -1.08
SMC1A-201ENST00000322213 ZNF622Q969S3 477 aaKnown RBP eCLIP8.33□□□□□ -1.081e-7■■■□□ 17.5
SMC1A-201ENST00000322213 SHROOM2Q13796 1616 aa8.33□□□□□ -1.08
SMC1A-201ENST00000322213 BMS1Q14692 1282 aaKnown RBP8.33□□□□□ -1.08
SMC1A-201ENST00000322213 LRSAM1Q6UWE0 723 aa8.33□□□□□ -1.08
SMC1A-201ENST00000322213 WDR63Q8IWG1 891 aa8.33□□□□□ -1.08
SMC1A-201ENST00000322213 CEP89Q96ST8 783 aa8.33□□□□□ -1.08
SMC1A-201ENST00000322213 ATAD2Q6PL18 1390 aa8.33□□□□□ -1.08
SMC1A-201ENST00000322213 FAM193AP78312 1265 aa8.33□□□□□ -1.08
SMC1A-201ENST00000322213 C9orf84Q5VXU9 1444 aa8.33□□□□□ -1.08
SMC1A-201ENST00000322213 NOL7Q9UMY1 257 aaKnown RBP8.33□□□□□ -1.08
SMC1A-201ENST00000322213 HIP1O00291 1037 aa8.33□□□□□ -1.08
SMC1A-201ENST00000322213 SFPQP23246 707 aaKnown RBP eCLIP8.33□□□□□ -1.08
SMC1A-201ENST00000322213 GSDMDP57764 484 aa8.33□□□□□ -1.08
SMC1A-201ENST00000322213 TNNT1P13805 278 aa8.33□□□□□ -1.08
SMC1A-201ENST00000322213 MICALCLQ6ZW33 695 aa8.33□□□□□ -1.08
SMC1A-201ENST00000322213 GABPB1Q06547 395 aaPredicted RBP8.32□□□□□ -1.08
SMC1A-201ENST00000322213 CEP135Q66GS9 1140 aa8.32□□□□□ -1.08
SMC1A-201ENST00000322213 CEP57L1Q8IYX8 460 aa8.32□□□□□ -1.08
SMC1A-201ENST00000322213 CLIP2Q9UDT6 1046 aa8.32□□□□□ -1.08
SMC1A-201ENST00000322213 CCDC9Q9Y3X0 531 aaKnown RBP8.32□□□□□ -1.08
SMC1A-201ENST00000322213 CPLX1O14810 134 aa8.32□□□□□ -1.08
SMC1A-201ENST00000322213 ZSCAN12O43309 604 aa8.32□□□□□ -1.08
SMC1A-201ENST00000322213 CASQ1P31415 396 aa8.32□□□□□ -1.08
SMC1A-201ENST00000322213 GTF2F1P35269 517 aaKnown RBP eCLIP8.32□□□□□ -1.08
SMC1A-201ENST00000322213 RIPK4P57078 832 aa8.32□□□□□ -1.08
SMC1A-201ENST00000322213 BCAR3O75815 825 aa8.32□□□□□ -1.08
SMC1A-201ENST00000322213 CHD2O14647 1828 aaKnown RBP8.32□□□□□ -1.08
SMC1A-201ENST00000322213 PPP2R1AP30153 589 aa8.32□□□□□ -1.08
SMC1A-201ENST00000322213 CPLX2Q6PUV4 134 aaKnown RBP8.32□□□□□ -1.08
SMC1A-201ENST00000322213 V9GYY5 206 aaPredicted RBP8.32□□□□□ -1.08
SMC1A-201ENST00000322213 CLSTN1O94985 981 aa8.32□□□□□ -1.08
SMC1A-201ENST00000322213 TTC31Q49AM3 519 aaPredicted RBP8.32□□□□□ -1.08
SMC1A-201ENST00000322213 CCDC184Q52MB2 194 aa8.32□□□□□ -1.08
SMC1A-201ENST00000322213 PCMTD1Q96MG8 357 aaPredicted RBP8.32□□□□□ -1.08
SMC1A-201ENST00000322213 MYCBPQ99417 103 aaPredicted RBP8.32□□□□□ -1.08
SMC1A-201ENST00000322213 SENP3Q9H4L4 574 aaPredicted RBP8.31□□□□□ -1.08
SMC1A-201ENST00000322213 UGGT2Q9NYU1 1516 aa8.31□□□□□ -1.08
SMC1A-201ENST00000322213 FANCD2Q9BXW9 1451 aa8.31□□□□□ -1.08
SMC1A-201ENST00000322213 GNAI1P63096 354 aa8.31□□□□□ -1.08
SMC1A-201ENST00000322213 CEP152O94986 1710 aa8.31□□□□□ -1.08
SMC1A-201ENST00000322213 BAG4O95429 457 aaKnown RBP8.31□□□□□ -1.08
SMC1A-201ENST00000322213 SERPINC1P01008 464 aa8.31□□□□□ -1.08
SMC1A-201ENST00000322213 ATF7IPQ6VMQ6 1270 aa8.31□□□□□ -1.08
SMC1A-201ENST00000322213 STAC3Q96MF2 364 aa8.31□□□□□ -1.08
SMC1A-201ENST00000322213 SRCIN1Q9C0H9 1055 aa8.31□□□□□ -1.08
SMC1A-201ENST00000322213 TDO2P48775 406 aa8.31□□□□□ -1.08
SMC1A-201ENST00000322213 CCDC88AQ3V6T2 1871 aa8.31□□□□□ -1.08
SMC1A-201ENST00000322213 SKIDA1Q1XH10 827 aa8.31□□□□□ -1.08
SMC1A-201ENST00000322213 TRIM34Q9BYJ4 488 aa8.31□□□□□ -1.08
SMC1A-201ENST00000322213 RASSF4Q9H2L5 321 aa8.31□□□□□ -1.08
SMC1A-201ENST00000322213 LRRIQ1Q96JM4 1722 aa8.31□□□□□ -1.08
SMC1A-201ENST00000322213 NAP1L1P55209 391 aaKnown RBP8.3□□□□□ -1.08
SMC1A-201ENST00000322213 NOLC1Q14978 699 aaKnown RBP eCLIP8.3□□□□□ -1.085e-7■□□□□ 9.5
SMC1A-201ENST00000322213 C8orf34Q49A92 452 aa8.3□□□□□ -1.08
SMC1A-201ENST00000322213 CRACR2AQ9BSW2 395 aa8.3□□□□□ -1.08
SMC1A-201ENST00000322213 NOB1Q9ULX3 412 aaKnown RBP8.3□□□□□ -1.08
SMC1A-201ENST00000322213 MNAT1P51948 309 aa8.3□□□□□ -1.08
SMC1A-201ENST00000322213 AKAP17AQ02040 695 aaKnown RBP8.3□□□□□ -1.08
SMC1A-201ENST00000322213 SAFB2Q14151 953 aaKnown RBP eCLIP8.3□□□□□ -1.08
SMC1A-201ENST00000322213 JMYQ8N9B5 988 aa8.3□□□□□ -1.08
SMC1A-201ENST00000322213 HSP90AB4PQ58FF6 505 aa8.3□□□□□ -1.08
SMC1A-201ENST00000322213 MYRIPQ8NFW9 859 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms