RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 WDR43Q15061 677 aaKnown RBP eCLIP20.62■□□□□ 0.89
PDLIM5-202ENST00000318007 CDK12Q9NYV4 1490 aaPredicted RBP20.61■□□□□ 0.89
PDLIM5-202ENST00000318007 PNISRQ8TF01 805 aaKnown RBP20.61■□□□□ 0.89
PDLIM5-202ENST00000318007 SMG6Q86US8 1419 aaKnown RBP20.61■□□□□ 0.89
PDLIM5-202ENST00000318007 DIAPH1O60610 1272 aaKnown RBP20.61■□□□□ 0.89
PDLIM5-202ENST00000318007 EIF4A2Q14240 407 aaKnown RBP20.6■□□□□ 0.89
PDLIM5-202ENST00000318007 JCADQ9P266 1359 aa20.6■□□□□ 0.89
PDLIM5-202ENST00000318007 COL3A1P02461 1466 aaPredicted RBP20.6■□□□□ 0.89
PDLIM5-202ENST00000318007 ADAMTS8Q9UP79 889 aa20.59■□□□□ 0.89
PDLIM5-202ENST00000318007 U2AF1L5P0DN76 240 aaPredicted RBP20.59■□□□□ 0.89
PDLIM5-202ENST00000318007 U2AF1Q01081 240 aaKnown RBP eCLIP20.59■□□□□ 0.891e-7■■■■■ 28.2
PDLIM5-202ENST00000318007 SHPRHQ149N8 1683 aa20.58■□□□□ 0.89
PDLIM5-202ENST00000318007 RGPD5Q99666 1765 aa20.58■□□□□ 0.89
PDLIM5-202ENST00000318007 HMOX1P09601 288 aa20.58■□□□□ 0.89
PDLIM5-202ENST00000318007 CCDC146Q8IYE0 955 aa20.58■□□□□ 0.89
PDLIM5-202ENST00000318007 COL22A1Q8NFW1 1626 aaPredicted RBP20.58■□□□□ 0.89
PDLIM5-202ENST00000318007 FAM83GA6ND36 823 aa20.57■□□□□ 0.88
PDLIM5-202ENST00000318007 USHBP1Q8N6Y0 703 aa20.57■□□□□ 0.88
PDLIM5-202ENST00000318007 IP6K1Q92551 441 aa20.57■□□□□ 0.88
PDLIM5-202ENST00000318007 STRN4Q9NRL3 753 aa20.56■□□□□ 0.88
PDLIM5-202ENST00000318007 IL13P35225 146 aa20.55■□□□□ 0.88
PDLIM5-202ENST00000318007 CSB-PGBD3P0DP91 1061 aa20.55■□□□□ 0.88
PDLIM5-202ENST00000318007 ANKRD24Q8TF21 1146 aa20.55■□□□□ 0.88
PDLIM5-202ENST00000318007 C8orf37Q96NL8 207 aa20.54■□□□□ 0.88
PDLIM5-202ENST00000318007 NUDCQ9Y266 331 aa20.54■□□□□ 0.88
PDLIM5-202ENST00000318007 RTL1A6NKG5 1358 aa20.54■□□□□ 0.88
PDLIM5-202ENST00000318007 AEBP1Q8IUX7 1158 aa20.54■□□□□ 0.88
PDLIM5-202ENST00000318007 BTG4Q9NY30 223 aa20.54■□□□□ 0.88
PDLIM5-202ENST00000318007 SALL2Q9Y467 1007 aaPredicted RBP20.54■□□□□ 0.88
PDLIM5-202ENST00000318007 CPDO75976 1380 aa20.53■□□□□ 0.88
PDLIM5-202ENST00000318007 INSRP06213 1382 aa20.53■□□□□ 0.88
PDLIM5-202ENST00000318007 LRP6O75581 1613 aa20.52■□□□□ 0.88
PDLIM5-202ENST00000318007 FBXO41Q8TF61 875 aa20.52■□□□□ 0.88
PDLIM5-202ENST00000318007 USP35Q9P2H5 1018 aa20.52■□□□□ 0.87
PDLIM5-202ENST00000318007 CAMTA1Q9Y6Y1 1673 aa20.51■□□□□ 0.87
PDLIM5-202ENST00000318007 MEX3CQ5U5Q3 659 aaKnown RBP20.51■□□□□ 0.87
PDLIM5-202ENST00000318007 EYA1Q99502 592 aa20.51■□□□□ 0.87
PDLIM5-202ENST00000318007 ERBB3P21860 1342 aa20.51■□□□□ 0.87
PDLIM5-202ENST00000318007 RGPD2P0DJD1 1756 aa20.51■□□□□ 0.87
PDLIM5-202ENST00000318007 SULT6B1Q6IMI4 303 aa20.5■□□□□ 0.87
PDLIM5-202ENST00000318007 COL18A1P39060 1754 aa20.5■□□□□ 0.87
PDLIM5-202ENST00000318007 NBPF6Q5VWK0 638 aa20.5■□□□□ 0.87
PDLIM5-202ENST00000318007 NBPF4Q96M43 638 aa20.5■□□□□ 0.87
PDLIM5-202ENST00000318007 NLRP2Q9NX02 1062 aa20.5■□□□□ 0.87
PDLIM5-202ENST00000318007 KIF24Q5T7B8 1368 aa20.5■□□□□ 0.87
PDLIM5-202ENST00000318007 EVA1CP58658 441 aa20.49■□□□□ 0.87
PDLIM5-202ENST00000318007 BLMP54132 1417 aaPredicted RBP20.49■□□□□ 0.87
PDLIM5-202ENST00000318007 HNRNPUQ00839 825 aaKnown RBP eCLIP20.48■□□□□ 0.87
PDLIM5-202ENST00000318007 NGLY1Q96IV0 654 aa20.48■□□□□ 0.87
PDLIM5-202ENST00000318007 SPATA31A6Q5VVP1 1343 aa20.48■□□□□ 0.87
PDLIM5-202ENST00000318007 LMO7Q8WWI1 1683 aa20.47■□□□□ 0.87
PDLIM5-202ENST00000318007 PRKAR2BP31323 418 aa20.46■□□□□ 0.87
PDLIM5-202ENST00000318007 NEUROD2Q15784 382 aa20.46■□□□□ 0.87
PDLIM5-202ENST00000318007 LARP1Q6PKG0 1096 aaKnown RBP20.46■□□□□ 0.87
PDLIM5-202ENST00000318007 TOM1L2Q6ZVM7 507 aa20.46■□□□□ 0.87
PDLIM5-202ENST00000318007 COL5A2P05997 1499 aaPredicted RBP20.46■□□□□ 0.87
PDLIM5-202ENST00000318007 PLCH1Q4KWH8 1693 aa20.45■□□□□ 0.86
PDLIM5-202ENST00000318007 RRP7AQ9Y3A4 280 aaKnown RBP20.45■□□□□ 0.86
PDLIM5-202ENST00000318007 COL14A1Q05707 1796 aaKnown RBP20.45■□□□□ 0.86
PDLIM5-202ENST00000318007 RSPH6AQ9H0K4 717 aa20.44■□□□□ 0.86
PDLIM5-202ENST00000318007 CCDC9Q9Y3X0 531 aaKnown RBP20.43■□□□□ 0.86
PDLIM5-202ENST00000318007 IGSF1Q8N6C5 1336 aa20.43■□□□□ 0.86
PDLIM5-202ENST00000318007 RGPD1P0DJD0 1748 aa20.43■□□□□ 0.86
PDLIM5-202ENST00000318007 APAF1O14727 1248 aa20.42■□□□□ 0.86
PDLIM5-202ENST00000318007 WDR17Q8IZU2 1322 aa20.41■□□□□ 0.86
PDLIM5-202ENST00000318007 PHACTR3Q96KR7 559 aa20.41■□□□□ 0.86
PDLIM5-202ENST00000318007 MAPK8IP3Q9UPT6 1336 aa20.41■□□□□ 0.86
PDLIM5-202ENST00000318007 FCHSD2O94868 740 aa20.39■□□□□ 0.85
PDLIM5-202ENST00000318007 RUNDC1Q96C34 613 aa20.39■□□□□ 0.85
PDLIM5-202ENST00000318007 PLEKHF1Q96S99 279 aa20.39■□□□□ 0.85
PDLIM5-202ENST00000318007 ABCC6O95255 1503 aa20.38■□□□□ 0.85
PDLIM5-202ENST00000318007 TCP11L2Q8N4U5 519 aa20.37■□□□□ 0.85
PDLIM5-202ENST00000318007 USP21Q9UK80 565 aa20.37■□□□□ 0.85
PDLIM5-202ENST00000318007 NEFMP07197 916 aa20.37■□□□□ 0.85
PDLIM5-202ENST00000318007 AFF2P51816 1311 aa20.36■□□□□ 0.85
PDLIM5-202ENST00000318007 SLIT2O94813 1529 aa20.36■□□□□ 0.85
PDLIM5-202ENST00000318007 CRB1P82279 1406 aa20.35■□□□□ 0.85
PDLIM5-202ENST00000318007 KDRP35968 1356 aa20.35■□□□□ 0.85
PDLIM5-202ENST00000318007 NRAPQ86VF7 1730 aa20.35■□□□□ 0.85
PDLIM5-202ENST00000318007 UNC5CLQ8IV45 518 aa20.34■□□□□ 0.85
PDLIM5-202ENST00000318007 RAPGEF4Q8WZA2 1011 aa20.34■□□□□ 0.85
PDLIM5-202ENST00000318007 BCL9LQ86UU0 1499 aa20.33■□□□□ 0.85
PDLIM5-202ENST00000318007 FAM208AQ9UK61 1670 aaKnown RBP20.33■□□□□ 0.85
PDLIM5-202ENST00000318007 MEGF6O75095 1541 aa20.33■□□□□ 0.85
PDLIM5-202ENST00000318007 MTHFSDQ2M296 383 aaKnown RBP20.32■□□□□ 0.84
PDLIM5-202ENST00000318007 CARD10Q9BWT7 1032 aa20.32■□□□□ 0.84
PDLIM5-202ENST00000318007 PNNQ9H307 717 aaKnown RBP20.32■□□□□ 0.84
PDLIM5-202ENST00000318007 FNBP4Q8N3X1 1017 aaPredicted RBP20.31■□□□□ 0.84
PDLIM5-202ENST00000318007 NWD2Q9ULI1 1742 aa20.31■□□□□ 0.84
PDLIM5-202ENST00000318007 A0A0G2JS52 829 aa20.3■□□□□ 0.84
PDLIM5-202ENST00000318007 TMPOP42166 694 aaKnown RBP20.3■□□□□ 0.84
PDLIM5-202ENST00000318007 RIPK4P57078 832 aa20.3■□□□□ 0.84
PDLIM5-202ENST00000318007 MYT1Q01538 1121 aa20.3■□□□□ 0.84
PDLIM5-202ENST00000318007 ILDR1Q86SU0 546 aaPredicted RBP20.3■□□□□ 0.84
PDLIM5-202ENST00000318007 TATP17735 454 aaPredicted RBP20.29■□□□□ 0.84
PDLIM5-202ENST00000318007 DCTN1Q14203 1278 aa20.29■□□□□ 0.84
PDLIM5-202ENST00000318007 THUMPD2Q9BTF0 503 aaKnown RBP20.28■□□□□ 0.84
PDLIM5-202ENST00000318007 IL2RBP14784 551 aa20.28■□□□□ 0.84
PDLIM5-202ENST00000318007 FAM98CQ17RN3 349 aaKnown RBP20.28■□□□□ 0.84
PDLIM5-202ENST00000318007 SPATA31A1Q5TZJ5 1347 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms