RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 IFT57Q9NWB7 429 aa5.82□□□□□ -1.48
PTPN13-201ENST00000316707 ASXL2Q76L83 1435 aa5.82□□□□□ -1.48
PTPN13-201ENST00000316707 CDC42BPAQ5VT25 1732 aa5.82□□□□□ -1.48
PTPN13-201ENST00000316707 PRIM1P49642 420 aaKnown RBP5.82□□□□□ -1.48
PTPN13-201ENST00000316707 TTC22Q5TAA0 569 aa5.82□□□□□ -1.48
PTPN13-201ENST00000316707 TRIM35Q9UPQ4 493 aa5.82□□□□□ -1.48
PTPN13-201ENST00000316707 USP26Q9BXU7 913 aa5.82□□□□□ -1.48
PTPN13-201ENST00000316707 FOXD4L1Q9NU39 408 aa5.82□□□□□ -1.48
PTPN13-201ENST00000316707 GTF2F1P35269 517 aaKnown RBP eCLIP5.82□□□□□ -1.48
PTPN13-201ENST00000316707 PIBF1Q8WXW3 757 aa5.82□□□□□ -1.48
PTPN13-201ENST00000316707 FANCAO15360 1455 aa5.81□□□□□ -1.48
PTPN13-201ENST00000316707 GOLGA6L6A8MZA4 724 aa5.81□□□□□ -1.48
PTPN13-201ENST00000316707 RBM10P98175 930 aaKnown RBP5.81□□□□□ -1.48
PTPN13-201ENST00000316707 PLEKHF1Q96S99 279 aa5.81□□□□□ -1.48
PTPN13-201ENST00000316707 KIF3AQ9Y496 699 aa5.81□□□□□ -1.48
PTPN13-201ENST00000316707 ABCC4O15439 1325 aa5.81□□□□□ -1.48
PTPN13-201ENST00000316707 ERC2O15083 957 aa5.81□□□□□ -1.48
PTPN13-201ENST00000316707 AFAP1Q8N556 730 aa5.81□□□□□ -1.48
PTPN13-201ENST00000316707 CHGAP10645 457 aaKnown RBP5.81□□□□□ -1.48
PTPN13-201ENST00000316707 ARAP3Q8WWN8 1544 aa5.81□□□□□ -1.48
PTPN13-201ENST00000316707 WDR33Q9C0J8 1336 aaKnown RBP5.81□□□□□ -1.48
PTPN13-201ENST00000316707 NRXN1Q9ULB1 1477 aa5.81□□□□□ -1.48
PTPN13-201ENST00000316707 PRDM4Q9UKN5 801 aa5.81□□□□□ -1.48
PTPN13-201ENST00000316707 BRD1O95696 1058 aa5.81□□□□□ -1.48
PTPN13-201ENST00000316707 VAMP4O75379 141 aa5.8□□□□□ -1.48
PTPN13-201ENST00000316707 NFE2L2Q16236 605 aa5.8□□□□□ -1.48
PTPN13-201ENST00000316707 PLEKHM2Q8IWE5 1019 aa5.8□□□□□ -1.48
PTPN13-201ENST00000316707 ANKRD44Q8N8A2 993 aa5.8□□□□□ -1.48
PTPN13-201ENST00000316707 PREX2Q70Z35 1606 aa5.8□□□□□ -1.48
PTPN13-201ENST00000316707 MRPL50Q8N5N7 158 aaKnown RBP5.8□□□□□ -1.48
PTPN13-201ENST00000316707 FEZ1Q99689 392 aa5.8□□□□□ -1.48
PTPN13-201ENST00000316707 MED14O60244 1454 aa5.8□□□□□ -1.48
PTPN13-201ENST00000316707 RBM42Q9BTD8 480 aaKnown RBP5.8□□□□□ -1.48
PTPN13-201ENST00000316707 PODXL2Q9NZ53 605 aa5.8□□□□□ -1.48
PTPN13-201ENST00000316707 ZFYVE9O95405 1425 aa5.8□□□□□ -1.48
PTPN13-201ENST00000316707 PTCH1Q13635 1447 aa5.8□□□□□ -1.48
PTPN13-201ENST00000316707 SYCE3A1L190 88 aa5.8□□□□□ -1.48
PTPN13-201ENST00000316707 CD2BP2O95400 341 aaKnown RBP5.8□□□□□ -1.48
PTPN13-201ENST00000316707 FAM193AP78312 1265 aa5.8□□□□□ -1.48
PTPN13-201ENST00000316707 TWISTNBQ3B726 338 aaPredicted RBP5.79□□□□□ -1.48
PTPN13-201ENST00000316707 CREBRFQ8IUR6 639 aa5.79□□□□□ -1.48
PTPN13-201ENST00000316707 CUL4AQ13619 759 aa5.79□□□□□ -1.48
PTPN13-201ENST00000316707 NOLC1Q14978 699 aaKnown RBP eCLIP5.79□□□□□ -1.48
PTPN13-201ENST00000316707 PNPLA6Q8IY17 1366 aa5.79□□□□□ -1.48
PTPN13-201ENST00000316707 IQGAP1P46940 1657 aa5.79□□□□□ -1.48
PTPN13-201ENST00000316707 OSBPL3Q9H4L5 887 aa5.79□□□□□ -1.48
PTPN13-201ENST00000316707 DMTNQ08495 405 aa5.79□□□□□ -1.48
PTPN13-201ENST00000316707 USP25Q9UHP3 1055 aa5.79□□□□□ -1.48
PTPN13-201ENST00000316707 NEK4P51957 841 aa5.79□□□□□ -1.48
PTPN13-201ENST00000316707 SRPK2P78362 688 aaKnown RBP5.79□□□□□ -1.48
PTPN13-201ENST00000316707 TMEM63CQ9P1W3 806 aa5.79□□□□□ -1.48
PTPN13-201ENST00000316707 KDM5AP29375 1690 aaKnown RBP5.79□□□□□ -1.48
PTPN13-201ENST00000316707 PRKAR2BP31323 418 aa5.78□□□□□ -1.48
PTPN13-201ENST00000316707 SYCP1Q15431 976 aa5.78□□□□□ -1.48
PTPN13-201ENST00000316707 DNAJC5BQ9UF47 199 aa5.78□□□□□ -1.48
PTPN13-201ENST00000316707 ZNF853P0CG23 659 aa5.78□□□□□ -1.48
PTPN13-201ENST00000316707 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.78□□□□□ -1.48
PTPN13-201ENST00000316707 CCDC183Q5T5S1 534 aa5.78□□□□□ -1.48
PTPN13-201ENST00000316707 GGNBP2Q9H3C7 697 aa5.78□□□□□ -1.48
PTPN13-201ENST00000316707 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.78□□□□□ -1.48
PTPN13-201ENST00000316707 CD109Q6YHK3 1445 aa5.78□□□□□ -1.48
PTPN13-201ENST00000316707 SSH2Q76I76 1423 aa5.78□□□□□ -1.48
PTPN13-201ENST00000316707 CAVIN2O95810 425 aa5.78□□□□□ -1.48
PTPN13-201ENST00000316707 TMEM87AQ8NBN3 555 aa5.78□□□□□ -1.48
PTPN13-201ENST00000316707 RNF214Q8ND24 703 aa5.78□□□□□ -1.48
PTPN13-201ENST00000316707 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.78□□□□□ -1.48
PTPN13-201ENST00000316707 KIAA1210Q9ULL0 1709 aa5.77□□□□□ -1.49
PTPN13-201ENST00000316707 FYB1O15117 783 aa5.77□□□□□ -1.49
PTPN13-201ENST00000316707 FKBP5Q13451 457 aaPredicted RBP5.77□□□□□ -1.49
PTPN13-201ENST00000316707 SRCIN1Q9C0H9 1055 aa5.77□□□□□ -1.49
PTPN13-201ENST00000316707 TMX3Q96JJ7 454 aa5.77□□□□□ -1.49
PTPN13-201ENST00000316707 SPTLC3Q9NUV7 552 aa5.77□□□□□ -1.49
PTPN13-201ENST00000316707 SLC52A1Q9NWF4 448 aa5.77□□□□□ -1.49
PTPN13-201ENST00000316707 GSPT1P15170 499 aaKnown RBP5.77□□□□□ -1.49
PTPN13-201ENST00000316707 GPT2Q8TD30 523 aa5.77□□□□□ -1.49
PTPN13-201ENST00000316707 SETBP1Q9Y6X0 1596 aa5.77□□□□□ -1.49
PTPN13-201ENST00000316707 SDSP20132 328 aa5.77□□□□□ -1.49
PTPN13-201ENST00000316707 GABPB1Q06547 395 aaPredicted RBP5.77□□□□□ -1.49
PTPN13-201ENST00000316707 CHMP4AQ9BY43 222 aa5.77□□□□□ -1.49
PTPN13-201ENST00000316707 IL17RAQ96F46 866 aa5.77□□□□□ -1.49
PTPN13-201ENST00000316707 ZDHHC9Q9Y397 364 aa5.77□□□□□ -1.49
PTPN13-201ENST00000316707 PTPRCP08575 1304 aa5.76□□□□□ -1.49
PTPN13-201ENST00000316707 SIRT2Q8IXJ6 389 aa5.76□□□□□ -1.49
PTPN13-201ENST00000316707 VWDEQ8N2E2 1590 aa5.76□□□□□ -1.49
PTPN13-201ENST00000316707 UHRF1BP1LA0JNW5 1464 aa5.76□□□□□ -1.49
PTPN13-201ENST00000316707 ABCC1P33527 1531 aa5.76□□□□□ -1.49
PTPN13-201ENST00000316707 LMTK2Q8IWU2 1503 aa5.76□□□□□ -1.49
PTPN13-201ENST00000316707 MX1P20591 662 aa5.76□□□□□ -1.49
PTPN13-201ENST00000316707 ADGRB2O60241 1585 aa5.76□□□□□ -1.49
PTPN13-201ENST00000316707 GNAI3P08754 354 aa5.76□□□□□ -1.49
PTPN13-201ENST00000316707 ZSCAN20P17040 1043 aaPredicted RBP5.76□□□□□ -1.49
PTPN13-201ENST00000316707 ZGPATQ8N5A5 531 aaKnown RBP5.76□□□□□ -1.49
PTPN13-201ENST00000316707 CCDC66A2RUB6 948 aa5.75□□□□□ -1.49
PTPN13-201ENST00000316707 CCT4P50991 539 aaKnown RBP5.75□□□□□ -1.49
PTPN13-201ENST00000316707 UBE2HP62256 183 aa5.75□□□□□ -1.49
PTPN13-201ENST00000316707 TMEM132EQ6IEE7 984 aa5.75□□□□□ -1.49
PTPN13-201ENST00000316707 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.75□□□□□ -1.49
PTPN13-201ENST00000316707 KIAA0232Q92628 1395 aa5.75□□□□□ -1.49
PTPN13-201ENST00000316707 DHX8Q14562 1220 aaKnown RBP5.75□□□□□ -1.49
PTPN13-201ENST00000316707 MBIPQ9NS73 344 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms