RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 LRRFIP1Q32MZ4 808 aaKnown RBP13.81□□□□□ -0.2
SHROOM3-201ENST00000296043 CFAP100Q494V2 611 aa13.81□□□□□ -0.2
SHROOM3-201ENST00000296043 RALYLQ86SE5 291 aaKnown RBP13.81□□□□□ -0.2
SHROOM3-201ENST00000296043 CLNS1AP54105 237 aaKnown RBP13.81□□□□□ -0.2
SHROOM3-201ENST00000296043 CCDC183Q5T5S1 534 aa13.81□□□□□ -0.2
SHROOM3-201ENST00000296043 DNA2P51530 1060 aa13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 C1orf115Q9H7X2 142 aa13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 C11orf95C9JLR9 678 aaPredicted RBP13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 MAATS1Q7Z4T9 603 aa13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 ZSWIM4Q9H7M6 989 aa13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 V9GYY5 206 aaPredicted RBP13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 MCM5P33992 734 aa13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 CERS3Q8IU89 383 aa13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 BRMS1Q9HCU9 246 aa13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 SMC1AQ14683 1233 aaKnown RBP13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 CNKSR2Q8WXI2 1034 aa13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 TAF4BQ92750 862 aa13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 PANK2Q9BZ23 570 aa13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 CNTLNQ9NXG0 1405 aa13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 DAAM2Q86T65 1068 aa13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 MCM3P25205 808 aa13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 MCM2P49736 904 aa13.8□□□□□ -0.2
SHROOM3-201ENST00000296043 ERC2O15083 957 aa13.79□□□□□ -0.2
SHROOM3-201ENST00000296043 ADCY5O95622 1261 aa13.79□□□□□ -0.2
SHROOM3-201ENST00000296043 NUP133Q8WUM0 1156 aa13.79□□□□□ -0.2
SHROOM3-201ENST00000296043 PUS7Q96PZ0 661 aaKnown RBP13.79□□□□□ -0.2
SHROOM3-201ENST00000296043 A0A1B0GUL7 405 aa13.79□□□□□ -0.2
SHROOM3-201ENST00000296043 RBM27Q9P2N5 1060 aaKnown RBP13.79□□□□□ -0.2
SHROOM3-201ENST00000296043 ST20-MTHFSA0A0A6YYL1 179 aa13.79□□□□□ -0.2
SHROOM3-201ENST00000296043 KIF4BQ2VIQ3 1234 aa13.79□□□□□ -0.2
SHROOM3-201ENST00000296043 PIP4K2AP48426 406 aaPredicted RBP13.78□□□□□ -0.2
SHROOM3-201ENST00000296043 G3BP1Q13283 466 aaKnown RBP eCLIP13.78□□□□□ -0.2
SHROOM3-201ENST00000296043 ERICH2A1L162 156 aa13.78□□□□□ -0.2
SHROOM3-201ENST00000296043 ZSCAN12O43309 604 aa13.78□□□□□ -0.2
SHROOM3-201ENST00000296043 SETSIPP0DME0 302 aa13.78□□□□□ -0.2
SHROOM3-201ENST00000296043 SNW1Q13573 536 aaKnown RBP13.78□□□□□ -0.2
SHROOM3-201ENST00000296043 MCM6Q14566 821 aa13.78□□□□□ -0.2
SHROOM3-201ENST00000296043 PAIP2Q9BPZ3 127 aaKnown RBP13.78□□□□□ -0.2
SHROOM3-201ENST00000296043 CSB-PGBD3P0DP91 1061 aa13.78□□□□□ -0.2
SHROOM3-201ENST00000296043 WRNQ14191 1432 aaPredicted RBP eCLIP13.78□□□□□ -0.2
SHROOM3-201ENST00000296043 FYB1O15117 783 aa13.78□□□□□ -0.2
SHROOM3-201ENST00000296043 FMN1Q68DA7 1419 aa13.78□□□□□ -0.2
SHROOM3-201ENST00000296043 POTEB2H3BUK9 544 aa13.77□□□□□ -0.2
SHROOM3-201ENST00000296043 KIF4AO95239 1232 aa13.77□□□□□ -0.2
SHROOM3-201ENST00000296043 SYCP1Q15431 976 aa13.77□□□□□ -0.2
SHROOM3-201ENST00000296043 CNTROBQ8N137 903 aa13.77□□□□□ -0.2
SHROOM3-201ENST00000296043 STIM1Q13586 685 aa13.77□□□□□ -0.2
SHROOM3-201ENST00000296043 GIGYF2Q6Y7W6 1299 aaKnown RBP13.77□□□□□ -0.2
SHROOM3-201ENST00000296043 KIF27Q86VH2 1401 aa13.77□□□□□ -0.2
SHROOM3-201ENST00000296043 SSFA2P28290 1259 aa13.77□□□□□ -0.2
SHROOM3-201ENST00000296043 CDCA7LQ96GN5 454 aa13.77□□□□□ -0.2
SHROOM3-201ENST00000296043 RSRC1Q96IZ7 334 aaKnown RBP13.77□□□□□ -0.21
SHROOM3-201ENST00000296043 NEBLO76041 1014 aa13.77□□□□□ -0.21
SHROOM3-201ENST00000296043 CAPN2P17655 700 aa13.77□□□□□ -0.21
SHROOM3-201ENST00000296043 GTF3C6Q969F1 213 aa13.77□□□□□ -0.21
SHROOM3-201ENST00000296043 TNPO1Q92973 898 aaKnown RBP13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 SPECC1LQ69YQ0 1117 aa13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 MIPOL1Q8TD10 442 aa13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 NAP1L3Q99457 506 aaPredicted RBP13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 API5Q9BZZ5 524 aaKnown RBP13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 TANGO6Q9C0B7 1094 aa13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 MTMR7Q9Y216 660 aa13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 LRCH2Q5VUJ6 765 aa13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 CCDC121Q6ZUS5 278 aa13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 FSD1Q9BTV5 496 aa13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 CEP83Q9Y592 693 aa13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 NGEFQ8N5V2 710 aa13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 NUP155O75694 1391 aa13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 SKAP1Q86WV1 359 aa13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 CDK5RAP3Q96JB5 506 aa13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 CCDC6Q16204 474 aa13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 CCDC178Q5BJE1 867 aa13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 DACH1Q9UI36 760 aa13.76□□□□□ -0.21
SHROOM3-201ENST00000296043 GOLIM4O00461 696 aa13.75□□□□□ -0.21
SHROOM3-201ENST00000296043 KRBA2Q6ZNG9 492 aa13.75□□□□□ -0.21
SHROOM3-201ENST00000296043 EIF2S2P20042 333 aaKnown RBP13.75□□□□□ -0.21
SHROOM3-201ENST00000296043 LARP1BQ659C4 914 aaKnown RBP13.75□□□□□ -0.21
SHROOM3-201ENST00000296043 TERF2IPQ9NYB0 399 aa13.75□□□□□ -0.21
SHROOM3-201ENST00000296043 CEP112Q8N8E3 955 aa13.75□□□□□ -0.21
SHROOM3-201ENST00000296043 JMYQ8N9B5 988 aa13.75□□□□□ -0.21
SHROOM3-201ENST00000296043 CHMP7Q8WUX9 453 aaPredicted RBP13.75□□□□□ -0.21
SHROOM3-201ENST00000296043 RNF216Q9NWF9 866 aaPredicted RBP13.75□□□□□ -0.21
SHROOM3-201ENST00000296043 SWAP70Q9UH65 585 aa13.74□□□□□ -0.21
SHROOM3-201ENST00000296043 CFAP57Q96MR6 1250 aa13.74□□□□□ -0.21
SHROOM3-201ENST00000296043 VPS18Q9P253 973 aa13.74□□□□□ -0.21
SHROOM3-201ENST00000296043 XRCC6P12956 609 aaKnown RBP eCLIP13.74□□□□□ -0.21
SHROOM3-201ENST00000296043 SSBP05455 408 aaKnown RBP eCLIP13.73□□□□□ -0.21
SHROOM3-201ENST00000296043 EIF5P55010 431 aaKnown RBP13.73□□□□□ -0.21
SHROOM3-201ENST00000296043 AAMPQ13685 434 aa13.73□□□□□ -0.21
SHROOM3-201ENST00000296043 PAXBP1Q9Y5B6 917 aa13.73□□□□□ -0.21
SHROOM3-201ENST00000296043 SOGA1O94964 1423 aa13.73□□□□□ -0.21
SHROOM3-201ENST00000296043 SMTNL1A8MU46 457 aa13.72□□□□□ -0.21
SHROOM3-201ENST00000296043 CKAP2LQ8IYA6 745 aa13.72□□□□□ -0.21
SHROOM3-201ENST00000296043 KRT18P05783 430 aaKnown RBP13.72□□□□□ -0.21
SHROOM3-201ENST00000296043 RIPK4P57078 832 aa13.72□□□□□ -0.21
SHROOM3-201ENST00000296043 TMC6Q7Z403 805 aa13.72□□□□□ -0.21
SHROOM3-201ENST00000296043 ERC1Q8IUD2 1116 aa13.72□□□□□ -0.21
SHROOM3-201ENST00000296043 G3V3G9 751 aa13.72□□□□□ -0.21
SHROOM3-201ENST00000296043 TOP1P11387 765 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms