RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 SMC4Q9NTJ3 1288 aa11.23□□□□□ -0.61
PDGFC-201ENST00000274071 PRPF40AO75400 957 aaKnown RBP11.23□□□□□ -0.61
PDGFC-201ENST00000274071 WDR7Q9Y4E6 1490 aa11.22□□□□□ -0.61
PDGFC-201ENST00000274071 K7ELQ4 463 aaPredicted RBP11.22□□□□□ -0.61
PDGFC-201ENST00000274071 GRIPAP1Q4V328 841 aa11.22□□□□□ -0.61
PDGFC-201ENST00000274071 KIF2CQ99661 725 aa11.22□□□□□ -0.61
PDGFC-201ENST00000274071 FAM135AQ9P2D6 1515 aa11.22□□□□□ -0.61
PDGFC-201ENST00000274071 ST20-MTHFSA0A0A6YYL1 179 aa11.22□□□□□ -0.61
PDGFC-201ENST00000274071 CYP2C19P33261 490 aa11.22□□□□□ -0.61
PDGFC-201ENST00000274071 ICE2Q659A1 982 aa11.22□□□□□ -0.61
PDGFC-201ENST00000274071 PLXNC1O60486 1568 aa11.21□□□□□ -0.61
PDGFC-201ENST00000274071 TRAPPC8Q9Y2L5 1435 aa11.21□□□□□ -0.61
PDGFC-201ENST00000274071 SYCP1Q15431 976 aa11.21□□□□□ -0.61
PDGFC-201ENST00000274071 RASSF4Q9H2L5 321 aa11.21□□□□□ -0.61
PDGFC-201ENST00000274071 ABCC1P33527 1531 aa11.21□□□□□ -0.62
PDGFC-201ENST00000274071 NAA30Q147X3 362 aaPredicted RBP11.21□□□□□ -0.62
PDGFC-201ENST00000274071 AFAP1Q8N556 730 aa11.21□□□□□ -0.62
PDGFC-201ENST00000274071 NSFL1CQ9UNZ2 370 aaKnown RBP11.21□□□□□ -0.62
PDGFC-201ENST00000274071 EGFL6Q8IUX8 553 aa11.2□□□□□ -0.62
PDGFC-201ENST00000274071 FAM53CQ9NYF3 392 aa11.2□□□□□ -0.62
PDGFC-201ENST00000274071 CEP83Q9Y592 693 aa11.2□□□□□ -0.62
PDGFC-201ENST00000274071 NKTRP30414 1462 aaKnown RBP11.2□□□□□ -0.62
PDGFC-201ENST00000274071 TULP1O00294 542 aaPredicted RBP11.2□□□□□ -0.62
PDGFC-201ENST00000274071 GYS2P54840 703 aa11.2□□□□□ -0.62
PDGFC-201ENST00000274071 ST7Q9NRC1 585 aa11.2□□□□□ -0.62
PDGFC-201ENST00000274071 DUOX2Q9NRD8 1548 aa11.2□□□□□ -0.62
PDGFC-201ENST00000274071 KIAA1524Q8TCG1 905 aa11.19□□□□□ -0.62
PDGFC-201ENST00000274071 RWDD1Q9H446 243 aaPredicted RBP11.19□□□□□ -0.62
PDGFC-201ENST00000274071 ARAP3Q8WWN8 1544 aa11.19□□□□□ -0.62
PDGFC-201ENST00000274071 SPAG9O60271 1321 aaKnown RBP11.19□□□□□ -0.62
PDGFC-201ENST00000274071 NFATC2IPQ8NCF5 419 aa11.19□□□□□ -0.62
PDGFC-201ENST00000274071 RBM42Q9BTD8 480 aaKnown RBP11.19□□□□□ -0.62
PDGFC-201ENST00000274071 ASXL2Q76L83 1435 aa11.19□□□□□ -0.62
PDGFC-201ENST00000274071 UNC13BO14795 1591 aa11.18□□□□□ -0.62
PDGFC-201ENST00000274071 CYP2E1P05181 493 aaPredicted RBP11.18□□□□□ -0.62
PDGFC-201ENST00000274071 NPM1P06748 294 aaKnown RBP eCLIP11.18□□□□□ -0.62
PDGFC-201ENST00000274071 CCDC172P0C7W6 258 aa11.18□□□□□ -0.62
PDGFC-201ENST00000274071 GUCY2CP25092 1073 aa11.18□□□□□ -0.62
PDGFC-201ENST00000274071 PKP1Q13835 747 aa11.18□□□□□ -0.62
PDGFC-201ENST00000274071 CTR9Q6PD62 1173 aa11.18□□□□□ -0.62
PDGFC-201ENST00000274071 CREBRFQ8IUR6 639 aa11.18□□□□□ -0.62
PDGFC-201ENST00000274071 CARD11Q9BXL7 1154 aa11.18□□□□□ -0.62
PDGFC-201ENST00000274071 KDM2AQ9Y2K7 1162 aa11.18□□□□□ -0.62
PDGFC-201ENST00000274071 AK9Q5TCS8 1911 aa11.18□□□□□ -0.62
PDGFC-201ENST00000274071 ERBINQ96RT1 1412 aa11.17□□□□□ -0.62
PDGFC-201ENST00000274071 NUCB2P80303 420 aa11.17□□□□□ -0.62
PDGFC-201ENST00000274071 TOMM22Q9NS69 142 aa11.17□□□□□ -0.62
PDGFC-201ENST00000274071 KIF16BQ96L93 1317 aa11.17□□□□□ -0.62
PDGFC-201ENST00000274071 E9PCH4 1651 aa11.17□□□□□ -0.62
PDGFC-201ENST00000274071 FANCAO15360 1455 aa11.17□□□□□ -0.62
PDGFC-201ENST00000274071 TRHP20396 242 aaPredicted RBP11.17□□□□□ -0.62
PDGFC-201ENST00000274071 GPATCH11Q8N954 259 aa11.17□□□□□ -0.62
PDGFC-201ENST00000274071 SLC26A8Q96RN1 970 aa11.17□□□□□ -0.62
PDGFC-201ENST00000274071 TSPY26PQ9H489 355 aa11.17□□□□□ -0.62
PDGFC-201ENST00000274071 ZNF446Q9NWS9 450 aa11.17□□□□□ -0.62
PDGFC-201ENST00000274071 TRIM66O15016 1216 aa11.16□□□□□ -0.62
PDGFC-201ENST00000274071 USP25Q9UHP3 1055 aa11.16□□□□□ -0.62
PDGFC-201ENST00000274071 ABCA9Q8IUA7 1624 aa11.16□□□□□ -0.62
PDGFC-201ENST00000274071 PHF14O94880 888 aa11.16□□□□□ -0.62
PDGFC-201ENST00000274071 RBM6P78332 1123 aaKnown RBP11.16□□□□□ -0.62
PDGFC-201ENST00000274071 WDR43Q15061 677 aaKnown RBP eCLIP11.16□□□□□ -0.62
PDGFC-201ENST00000274071 PYCARDQ9ULZ3 195 aa11.16□□□□□ -0.62
PDGFC-201ENST00000274071 ADCY5O95622 1261 aa11.16□□□□□ -0.62
PDGFC-201ENST00000274071 KMT5BQ4FZB7 885 aa11.16□□□□□ -0.62
PDGFC-201ENST00000274071 FAM43BQ6ZT52 329 aaPredicted RBP11.16□□□□□ -0.62
PDGFC-201ENST00000274071 C10orf67Q8IYJ2 551 aa11.16□□□□□ -0.62
PDGFC-201ENST00000274071 BRMS1Q9HCU9 246 aa11.16□□□□□ -0.62
PDGFC-201ENST00000274071 UHRF1BP1Q6BDS2 1440 aa11.15□□□□□ -0.62
PDGFC-201ENST00000274071 REC8O95072 547 aa11.15□□□□□ -0.62
PDGFC-201ENST00000274071 RLBP1P12271 317 aa11.15□□□□□ -0.62
PDGFC-201ENST00000274071 CASQ1P31415 396 aa11.15□□□□□ -0.62
PDGFC-201ENST00000274071 CHAMP1Q96JM3 812 aa11.15□□□□□ -0.62
PDGFC-201ENST00000274071 NOL10Q9BSC4 688 aaKnown RBP11.15□□□□□ -0.62
PDGFC-201ENST00000274071 POLKQ9UBT6 870 aa11.15□□□□□ -0.62
PDGFC-201ENST00000274071 IQGAP3Q86VI3 1631 aa11.15□□□□□ -0.62
PDGFC-201ENST00000274071 SYT10Q6XYQ8 523 aa11.15□□□□□ -0.62
PDGFC-201ENST00000274071 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.15□□□□□ -0.62
PDGFC-201ENST00000274071 MYO1CO00159 1063 aa11.14□□□□□ -0.63
PDGFC-201ENST00000274071 SRPK2P78362 688 aaKnown RBP11.14□□□□□ -0.63
PDGFC-201ENST00000274071 PLA2R1Q13018 1463 aa11.14□□□□□ -0.63
PDGFC-201ENST00000274071 RGL3Q3MIN7 710 aa11.14□□□□□ -0.63
PDGFC-201ENST00000274071 KIF1BPQ96EK5 621 aa11.14□□□□□ -0.63
PDGFC-201ENST00000274071 KCNF1Q9H3M0 494 aa11.14□□□□□ -0.63
PDGFC-201ENST00000274071 LCMT1Q9UIC8 334 aa11.13□□□□□ -0.63
PDGFC-201ENST00000274071 TNNQ9UQP3 1299 aa11.13□□□□□ -0.63
PDGFC-201ENST00000274071 DMRT2Q9Y5R5 561 aa11.13□□□□□ -0.63
PDGFC-201ENST00000274071 MAGI2Q86UL8 1455 aa11.13□□□□□ -0.63
PDGFC-201ENST00000274071 SATB1Q01826 763 aa11.13□□□□□ -0.63
PDGFC-201ENST00000274071 UVSSAQ2YD98 709 aa11.13□□□□□ -0.63
PDGFC-201ENST00000274071 MUM1L1Q5H9M0 696 aa11.13□□□□□ -0.63
PDGFC-201ENST00000274071 C14orf37Q86TY3 774 aa11.13□□□□□ -0.63
PDGFC-201ENST00000274071 ZFYVE16Q7Z3T8 1539 aa11.13□□□□□ -0.63
PDGFC-201ENST00000274071 ADGRL1O94910 1474 aa11.12□□□□□ -0.63
PDGFC-201ENST00000274071 SMTNL1A8MU46 457 aa11.12□□□□□ -0.63
PDGFC-201ENST00000274071 ZNF397Q8NF99 534 aaPredicted RBP11.12□□□□□ -0.63
PDGFC-201ENST00000274071 RALGAPBQ86X10 1494 aa11.12□□□□□ -0.63
PDGFC-201ENST00000274071 JRKLQ9Y4A0 524 aa11.12□□□□□ -0.63
PDGFC-201ENST00000274071 GOLGA6L6A8MZA4 724 aa11.11□□□□□ -0.63
PDGFC-201ENST00000274071 IRF6O14896 467 aa11.11□□□□□ -0.63
PDGFC-201ENST00000274071 CEP120Q8N960 986 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms