RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 QRICH2Q9H0J4 1663 aa13.77□□□□□ -0.21
VPS41-201ENST00000265745 SLC12A5Q9H2X9 1139 aa13.77□□□□□ -0.21
VPS41-201ENST00000265745 NRKQ7Z2Y5 1582 aa13.76□□□□□ -0.21
VPS41-201ENST00000265745 TRIM37O94972 964 aa13.76□□□□□ -0.21
VPS41-201ENST00000265745 TMC1Q8TDI8 760 aa13.76□□□□□ -0.21
VPS41-201ENST00000265745 COL5A2P05997 1499 aaPredicted RBP13.75□□□□□ -0.21
VPS41-201ENST00000265745 SPDYE4A6NLX3 237 aa13.75□□□□□ -0.21
VPS41-201ENST00000265745 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.75□□□□□ -0.21
VPS41-201ENST00000265745 TESK2Q96S53 571 aa13.75□□□□□ -0.21
VPS41-201ENST00000265745 PHRF1Q9P1Y6 1649 aaKnown RBP13.75□□□□□ -0.21
VPS41-201ENST00000265745 BRWD3Q6RI45 1802 aa13.74□□□□□ -0.21
VPS41-201ENST00000265745 ST20-MTHFSA0A0A6YYL1 179 aa13.74□□□□□ -0.21
VPS41-201ENST00000265745 SOX12O15370 315 aa13.74□□□□□ -0.21
VPS41-201ENST00000265745 TOM1L2Q6ZVM7 507 aa13.74□□□□□ -0.21
VPS41-201ENST00000265745 SLIT3O75094 1523 aa13.74□□□□□ -0.21
VPS41-201ENST00000265745 CRB1P82279 1406 aa13.73□□□□□ -0.21
VPS41-201ENST00000265745 THSD7AQ9UPZ6 1657 aa13.73□□□□□ -0.21
VPS41-201ENST00000265745 HDGFL2Q7Z4V5 671 aaPredicted RBP13.73□□□□□ -0.21
VPS41-201ENST00000265745 CAMKK2Q96RR4 588 aa13.73□□□□□ -0.21
VPS41-201ENST00000265745 TERF2IPQ9NYB0 399 aa13.73□□□□□ -0.21
VPS41-201ENST00000265745 USP31Q70CQ4 1352 aa13.72□□□□□ -0.21
VPS41-201ENST00000265745 WDR17Q8IZU2 1322 aa13.72□□□□□ -0.21
VPS41-201ENST00000265745 APBA3O96018 575 aa13.72□□□□□ -0.21
VPS41-201ENST00000265745 MKRN4PQ13434 485 aaPredicted RBP13.72□□□□□ -0.21
VPS41-201ENST00000265745 EZH2Q15910 746 aaKnown RBP13.72□□□□□ -0.21
VPS41-201ENST00000265745 NME9Q86XW9 330 aa13.72□□□□□ -0.21
VPS41-201ENST00000265745 FBXO3Q9UK99 471 aa13.72□□□□□ -0.21
VPS41-201ENST00000265745 LMO7Q8WWI1 1683 aa13.72□□□□□ -0.21
VPS41-201ENST00000265745 DISP2A7MBM2 1401 aa13.72□□□□□ -0.21
VPS41-201ENST00000265745 CARD10Q9BWT7 1032 aa13.71□□□□□ -0.21
VPS41-201ENST00000265745 CD163L1Q9NR16 1453 aa13.71□□□□□ -0.21
VPS41-201ENST00000265745 C11orf95C9JLR9 678 aaPredicted RBP13.7□□□□□ -0.22
VPS41-201ENST00000265745 CSB-PGBD3P0DP91 1061 aa13.7□□□□□ -0.22
VPS41-201ENST00000265745 CDCA7Q9BWT1 371 aaPredicted RBP13.7□□□□□ -0.22
VPS41-201ENST00000265745 PSDA5PKW4 1024 aaPredicted RBP13.69□□□□□ -0.22
VPS41-201ENST00000265745 DDB1Q16531 1140 aa13.69□□□□□ -0.22
VPS41-201ENST00000265745 PIK3C2AO00443 1686 aa13.68□□□□□ -0.22
VPS41-201ENST00000265745 A0A1W2PP64 1363 aa13.68□□□□□ -0.22
VPS41-201ENST00000265745 EDC4Q6P2E9 1401 aaKnown RBP13.67□□□□□ -0.22
VPS41-201ENST00000265745 R3HDM1Q15032 1099 aaKnown RBP13.67□□□□□ -0.22
VPS41-201ENST00000265745 MARCH10Q8NA82 808 aaPredicted RBP13.66□□□□□ -0.22
VPS41-201ENST00000265745 TIMELESSQ9UNS1 1208 aa13.66□□□□□ -0.22
VPS41-201ENST00000265745 PARD3Q8TEW0 1356 aa13.66□□□□□ -0.22
VPS41-201ENST00000265745 NINLQ9Y2I6 1382 aa13.66□□□□□ -0.22
VPS41-201ENST00000265745 NFAT5O94916 1531 aa13.65□□□□□ -0.22
VPS41-201ENST00000265745 EXOC5O00471 708 aa13.65□□□□□ -0.22
VPS41-201ENST00000265745 USP47Q96K76 1375 aa13.64□□□□□ -0.23
VPS41-201ENST00000265745 TMF1P82094 1093 aa13.64□□□□□ -0.23
VPS41-201ENST00000265745 PCGF6Q9BYE7 350 aa13.64□□□□□ -0.23
VPS41-201ENST00000265745 BCL11BQ9C0K0 894 aaPredicted RBP13.64□□□□□ -0.23
VPS41-201ENST00000265745 NLRP2Q9NX02 1062 aa13.64□□□□□ -0.23
VPS41-201ENST00000265745 OVOS2A0A0G2JMS6 1433 aa13.64□□□□□ -0.23
VPS41-201ENST00000265745 OVOS2A0A0J9YW53 1432 aa13.64□□□□□ -0.23
VPS41-201ENST00000265745 OVOS2Q6IE36 1432 aa13.64□□□□□ -0.23
VPS41-201ENST00000265745 ERBB3P21860 1342 aa13.64□□□□□ -0.23
VPS41-201ENST00000265745 CCDC7Q96M83 1385 aa13.63□□□□□ -0.23
VPS41-201ENST00000265745 PLSCR1O15162 318 aa13.63□□□□□ -0.23
VPS41-201ENST00000265745 PTF1AQ7RTS3 328 aa13.63□□□□□ -0.23
VPS41-201ENST00000265745 IP6K1Q92551 441 aa13.63□□□□□ -0.23
VPS41-201ENST00000265745 COL18A1P39060 1754 aa13.63□□□□□ -0.23
VPS41-201ENST00000265745 CLSPNQ9HAW4 1339 aa13.63□□□□□ -0.23
VPS41-201ENST00000265745 ANKRD24Q8TF21 1146 aa13.62□□□□□ -0.23
VPS41-201ENST00000265745 COG3Q96JB2 828 aa13.62□□□□□ -0.23
VPS41-201ENST00000265745 BCL9O00512 1426 aa13.62□□□□□ -0.23
VPS41-201ENST00000265745 CDCA8Q53HL2 280 aa13.61□□□□□ -0.23
VPS41-201ENST00000265745 NBPF14Q5TI25 921 aa13.61□□□□□ -0.23
VPS41-201ENST00000265745 PROM2Q8N271 834 aa13.61□□□□□ -0.23
VPS41-201ENST00000265745 AKAP12Q02952 1782 aa13.6□□□□□ -0.23
VPS41-201ENST00000265745 ANKRD36BQ8N2N9 1353 aa13.6□□□□□ -0.23
VPS41-201ENST00000265745 FYB1O15117 783 aa13.6□□□□□ -0.23
VPS41-201ENST00000265745 IL2RBP14784 551 aa13.6□□□□□ -0.23
VPS41-201ENST00000265745 FBLN1P23142 703 aa13.6□□□□□ -0.23
VPS41-201ENST00000265745 ABCC6O95255 1503 aa13.59□□□□□ -0.23
VPS41-201ENST00000265745 RGPD1P0DJD0 1748 aa13.59□□□□□ -0.23
VPS41-201ENST00000265745 MAP3K19Q56UN5 1328 aa13.59□□□□□ -0.23
VPS41-201ENST00000265745 SPINK5Q9NQ38 1064 aaPredicted RBP13.58□□□□□ -0.24
VPS41-201ENST00000265745 MON2Q7Z3U7 1717 aa13.58□□□□□ -0.24
VPS41-201ENST00000265745 PARP4Q9UKK3 1724 aaKnown RBP13.57□□□□□ -0.24
VPS41-201ENST00000265745 KCNQ2O43526 872 aa13.57□□□□□ -0.24
VPS41-201ENST00000265745 HOXC9P31274 260 aa13.57□□□□□ -0.24
VPS41-201ENST00000265745 LTV1Q96GA3 475 aaPredicted RBP13.57□□□□□ -0.24
VPS41-201ENST00000265745 GGNBP2Q9H3C7 697 aa13.57□□□□□ -0.24
VPS41-201ENST00000265745 TNS1Q9HBL0 1735 aaKnown RBP13.56□□□□□ -0.24
VPS41-201ENST00000265745 AMPHP49418 695 aa13.56□□□□□ -0.24
VPS41-201ENST00000265745 CARD14Q9BXL6 1004 aa13.56□□□□□ -0.24
VPS41-201ENST00000265745 VASPP50552 380 aaPredicted RBP13.55□□□□□ -0.24
VPS41-201ENST00000265745 TNS2Q63HR2 1409 aa13.55□□□□□ -0.24
VPS41-201ENST00000265745 LRRC37A3O60309 1634 aa13.54□□□□□ -0.24
VPS41-201ENST00000265745 PEAK1Q9H792 1746 aa13.54□□□□□ -0.24
VPS41-201ENST00000265745 POLA2Q14181 598 aa13.54□□□□□ -0.24
VPS41-201ENST00000265745 RRS1Q15050 365 aaKnown RBP13.54□□□□□ -0.24
VPS41-201ENST00000265745 TXNRD1Q16881 649 aa13.54□□□□□ -0.24
VPS41-201ENST00000265745 ACSBG1Q96GR2 724 aa13.54□□□□□ -0.24
VPS41-201ENST00000265745 ANO8Q9HCE9 1232 aaPredicted RBP13.53□□□□□ -0.24
VPS41-201ENST00000265745 USP54Q70EL1 1684 aa13.53□□□□□ -0.24
VPS41-201ENST00000265745 DDX54Q8TDD1 881 aaKnown RBP13.52□□□□□ -0.25
VPS41-201ENST00000265745 NBPF6Q5VWK0 638 aa13.51□□□□□ -0.25
VPS41-201ENST00000265745 CCER1Q8TC90 406 aaPredicted RBP13.51□□□□□ -0.25
VPS41-201ENST00000265745 NBPF4Q96M43 638 aa13.51□□□□□ -0.25
VPS41-201ENST00000265745 LRP5O75197 1615 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms