RNA–Protein interactions for RNA: ENST00000263694.8

SNRNP40-201, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP40, Length 1,597 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-201ENST00000263694 LRRC59Q96AG4 307 aaKnown RBP13.05□□□□□ -0.32
SNRNP40-201ENST00000263694 CFAP53Q96M91 514 aa13.05□□□□□ -0.32
SNRNP40-201ENST00000263694 ADAMTS8Q9UP79 889 aa13.05□□□□□ -0.32
SNRNP40-201ENST00000263694 SHPRHQ149N8 1683 aa13.05□□□□□ -0.32
SNRNP40-201ENST00000263694 CRYBG1Q9Y4K1 1723 aa13.04□□□□□ -0.32
SNRNP40-201ENST00000263694 COL3A1P02461 1466 aaPredicted RBP13.04□□□□□ -0.32
SNRNP40-201ENST00000263694 AMPHP49418 695 aa13.04□□□□□ -0.32
SNRNP40-201ENST00000263694 KCNH5Q8NCM2 988 aa13.04□□□□□ -0.32
SNRNP40-201ENST00000263694 PHRF1Q9P1Y6 1649 aaKnown RBP13.04□□□□□ -0.32
SNRNP40-201ENST00000263694 PNPLA6Q8IY17 1366 aa13.04□□□□□ -0.32
SNRNP40-201ENST00000263694 SMG6Q86US8 1419 aaKnown RBP13.04□□□□□ -0.32
SNRNP40-201ENST00000263694 COL16A1Q07092 1604 aaPredicted RBP13.03□□□□□ -0.32
SNRNP40-201ENST00000263694 DIAPH1O60610 1272 aaKnown RBP13.03□□□□□ -0.32
SNRNP40-201ENST00000263694 WDR43Q15061 677 aaKnown RBP eCLIP13.03□□□□□ -0.32
SNRNP40-201ENST00000263694 ARHGEF25Q86VW2 580 aa13.03□□□□□ -0.32
SNRNP40-201ENST00000263694 CDK12Q9NYV4 1490 aaPredicted RBP13.02□□□□□ -0.32
SNRNP40-201ENST00000263694 U2SURPO15042 1029 aaKnown RBP13.02□□□□□ -0.33
SNRNP40-201ENST00000263694 HOXC9P31274 260 aa13.02□□□□□ -0.33
SNRNP40-201ENST00000263694 LTV1Q96GA3 475 aaPredicted RBP13.02□□□□□ -0.33
SNRNP40-201ENST00000263694 RGPD5Q99666 1765 aa13.01□□□□□ -0.33
SNRNP40-201ENST00000263694 IL13P35225 146 aa13.01□□□□□ -0.33
SNRNP40-201ENST00000263694 HAP1P54257 671 aaPredicted RBP13.01□□□□□ -0.33
SNRNP40-201ENST00000263694 EIF4A2Q14240 407 aaKnown RBP13.01□□□□□ -0.33
SNRNP40-201ENST00000263694 CHRNA2Q15822 529 aa13.01□□□□□ -0.33
SNRNP40-201ENST00000263694 INSRP06213 1382 aa13.01□□□□□ -0.33
SNRNP40-201ENST00000263694 ABCA3Q99758 1704 aa13.01□□□□□ -0.33
SNRNP40-201ENST00000263694 FLT4P35916 1363 aa13□□□□□ -0.33
SNRNP40-201ENST00000263694 CCDC146Q8IYE0 955 aa13□□□□□ -0.33
SNRNP40-201ENST00000263694 AXIN2Q9Y2T1 843 aa13□□□□□ -0.33
SNRNP40-201ENST00000263694 KIAA0232Q92628 1395 aa12.99□□□□□ -0.33
SNRNP40-201ENST00000263694 U2AF1L5P0DN76 240 aaPredicted RBP12.99□□□□□ -0.33
SNRNP40-201ENST00000263694 HSPA1LP34931 641 aa12.99□□□□□ -0.33
SNRNP40-201ENST00000263694 U2AF1Q01081 240 aaKnown RBP eCLIP12.99□□□□□ -0.335e-8■■□□□ 11.8
SNRNP40-201ENST00000263694 SAMD1Q6SPF0 538 aaPredicted RBP12.99□□□□□ -0.33
SNRNP40-201ENST00000263694 IP6K1Q92551 441 aa12.99□□□□□ -0.33
SNRNP40-201ENST00000263694 RBM42Q9BTD8 480 aaKnown RBP12.99□□□□□ -0.33
SNRNP40-201ENST00000263694 NUTM2BA6NNL0 878 aaPredicted RBP12.98□□□□□ -0.33
SNRNP40-201ENST00000263694 NUTM2EB1AL46 878 aaPredicted RBP12.98□□□□□ -0.33
SNRNP40-201ENST00000263694 HMOX1P09601 288 aa12.98□□□□□ -0.33
SNRNP40-201ENST00000263694 HNRNPUQ00839 825 aaKnown RBP eCLIP12.98□□□□□ -0.33
SNRNP40-201ENST00000263694 NUTM2AQ8IVF1 878 aaPredicted RBP12.98□□□□□ -0.33
SNRNP40-201ENST00000263694 NUDCQ9Y266 331 aa12.98□□□□□ -0.33
SNRNP40-201ENST00000263694 COL18A1P39060 1754 aa12.97□□□□□ -0.33
SNRNP40-201ENST00000263694 RGPD2P0DJD1 1756 aa12.97□□□□□ -0.33
SNRNP40-201ENST00000263694 COL22A1Q8NFW1 1626 aaPredicted RBP12.96□□□□□ -0.33
SNRNP40-201ENST00000263694 PRDM11Q9NQV5 511 aa12.96□□□□□ -0.33
SNRNP40-201ENST00000263694 SALL2Q9Y467 1007 aaPredicted RBP12.96□□□□□ -0.33
SNRNP40-201ENST00000263694 RTL1A6NKG5 1358 aa12.96□□□□□ -0.34
SNRNP40-201ENST00000263694 FAM83GA6ND36 823 aa12.95□□□□□ -0.34
SNRNP40-201ENST00000263694 AEBP1Q8IUX7 1158 aa12.95□□□□□ -0.34
SNRNP40-201ENST00000263694 CPDO75976 1380 aa12.95□□□□□ -0.34
SNRNP40-201ENST00000263694 KIF24Q5T7B8 1368 aa12.95□□□□□ -0.34
SNRNP40-201ENST00000263694 ADAMTS2O95450 1211 aa12.94□□□□□ -0.34
SNRNP40-201ENST00000263694 USHBP1Q8N6Y0 703 aa12.94□□□□□ -0.34
SNRNP40-201ENST00000263694 ANKRD24Q8TF21 1146 aa12.94□□□□□ -0.34
SNRNP40-201ENST00000263694 EYA1Q99502 592 aa12.94□□□□□ -0.34
SNRNP40-201ENST00000263694 RGPD1P0DJD0 1748 aa12.94□□□□□ -0.34
SNRNP40-201ENST00000263694 KCNA4P22459 653 aa12.94□□□□□ -0.34
SNRNP40-201ENST00000263694 BLMP54132 1417 aaPredicted RBP12.94□□□□□ -0.34
SNRNP40-201ENST00000263694 SULT6B1Q6IMI4 303 aa12.94□□□□□ -0.34
SNRNP40-201ENST00000263694 APAF1O14727 1248 aa12.93□□□□□ -0.34
SNRNP40-201ENST00000263694 NBPF6Q5VWK0 638 aa12.93□□□□□ -0.34
SNRNP40-201ENST00000263694 NBPF4Q96M43 638 aa12.93□□□□□ -0.34
SNRNP40-201ENST00000263694 RSPH6AQ9H0K4 717 aa12.93□□□□□ -0.34
SNRNP40-201ENST00000263694 CAMTA1Q9Y6Y1 1673 aa12.92□□□□□ -0.34
SNRNP40-201ENST00000263694 PRKAR2BP31323 418 aa12.92□□□□□ -0.34
SNRNP40-201ENST00000263694 PLEKHF1Q96S99 279 aa12.92□□□□□ -0.34
SNRNP40-201ENST00000263694 RRP7AQ9Y3A4 280 aaKnown RBP12.92□□□□□ -0.34
SNRNP40-201ENST00000263694 JCADQ9P266 1359 aa12.92□□□□□ -0.34
SNRNP40-201ENST00000263694 FCHSD2O94868 740 aa12.91□□□□□ -0.34
SNRNP40-201ENST00000263694 RUNDC1Q96C34 613 aa12.91□□□□□ -0.34
SNRNP40-201ENST00000263694 PHACTR3Q96KR7 559 aa12.91□□□□□ -0.34
SNRNP40-201ENST00000263694 IGSF1Q8N6C5 1336 aa12.91□□□□□ -0.34
SNRNP40-201ENST00000263694 NEUROD2Q15784 382 aa12.9□□□□□ -0.34
SNRNP40-201ENST00000263694 LMO7Q8WWI1 1683 aa12.9□□□□□ -0.34
SNRNP40-201ENST00000263694 ERBB3P21860 1342 aa12.9□□□□□ -0.34
SNRNP40-201ENST00000263694 CSB-PGBD3P0DP91 1061 aa12.9□□□□□ -0.35
SNRNP40-201ENST00000263694 TCP11L2Q8N4U5 519 aa12.9□□□□□ -0.35
SNRNP40-201ENST00000263694 STRN4Q9NRL3 753 aa12.9□□□□□ -0.35
SNRNP40-201ENST00000263694 NLRP2Q9NX02 1062 aa12.9□□□□□ -0.35
SNRNP40-201ENST00000263694 BTG4Q9NY30 223 aa12.9□□□□□ -0.35
SNRNP40-201ENST00000263694 COL14A1Q05707 1796 aaKnown RBP12.88□□□□□ -0.35
SNRNP40-201ENST00000263694 COL5A2P05997 1499 aaPredicted RBP12.88□□□□□ -0.35
SNRNP40-201ENST00000263694 EVA1CP58658 441 aa12.87□□□□□ -0.35
SNRNP40-201ENST00000263694 LARP1Q6PKG0 1096 aaKnown RBP12.87□□□□□ -0.35
SNRNP40-201ENST00000263694 MAPK8IP3Q9UPT6 1336 aa12.87□□□□□ -0.35
SNRNP40-201ENST00000263694 LRP6O75581 1613 aa12.87□□□□□ -0.35
SNRNP40-201ENST00000263694 ABCC6O95255 1503 aa12.87□□□□□ -0.35
SNRNP40-201ENST00000263694 C8orf37Q96NL8 207 aa12.86□□□□□ -0.35
SNRNP40-201ENST00000263694 PLCH1Q4KWH8 1693 aa12.86□□□□□ -0.35
SNRNP40-201ENST00000263694 KDRP35968 1356 aa12.86□□□□□ -0.35
SNRNP40-201ENST00000263694 TMPOP42166 694 aaKnown RBP12.86□□□□□ -0.35
SNRNP40-201ENST00000263694 TOM1L2Q6ZVM7 507 aa12.86□□□□□ -0.35
SNRNP40-201ENST00000263694 PNNQ9H307 717 aaKnown RBP12.86□□□□□ -0.35
SNRNP40-201ENST00000263694 ZBED9Q6R2W3 1325 aa12.85□□□□□ -0.35
SNRNP40-201ENST00000263694 WDR17Q8IZU2 1322 aa12.85□□□□□ -0.35
SNRNP40-201ENST00000263694 USP35Q9P2H5 1018 aa12.85□□□□□ -0.35
SNRNP40-201ENST00000263694 SPATA31A6Q5VVP1 1343 aa12.85□□□□□ -0.35
SNRNP40-201ENST00000263694 FAM208AQ9UK61 1670 aaKnown RBP12.84□□□□□ -0.35
SNRNP40-201ENST00000263694 DLG5Q8TDM6 1919 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms