RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 ARFGEF2Q9Y6D5 1785 aa8.27□□□□□ -1.08
TOPBP1-201ENST00000260810 PTF1AQ7RTS3 328 aa8.27□□□□□ -1.08
TOPBP1-201ENST00000260810 BRCA1P38398 1863 aaKnown RBP8.27□□□□□ -1.09
TOPBP1-201ENST00000260810 USP19O94966 1318 aa8.27□□□□□ -1.09
TOPBP1-201ENST00000260810 RPGRIP1LQ68CZ1 1315 aa8.27□□□□□ -1.09
TOPBP1-201ENST00000260810 BCL9LQ86UU0 1499 aa8.27□□□□□ -1.09
TOPBP1-201ENST00000260810 POLKQ9UBT6 870 aa8.27□□□□□ -1.09
TOPBP1-201ENST00000260810 HEG1Q9ULI3 1381 aa8.27□□□□□ -1.09
TOPBP1-201ENST00000260810 UBR3Q6ZT12 1888 aa8.27□□□□□ -1.09
TOPBP1-201ENST00000260810 BCORQ6W2J9 1755 aa8.26□□□□□ -1.09
TOPBP1-201ENST00000260810 CACNA1FO60840 1977 aa8.26□□□□□ -1.09
TOPBP1-201ENST00000260810 NSD2O96028 1365 aa8.26□□□□□ -1.09
TOPBP1-201ENST00000260810 PLEKHG3A1L390 1219 aa8.26□□□□□ -1.09
TOPBP1-201ENST00000260810 SLC51AQ86UW1 340 aa8.26□□□□□ -1.09
TOPBP1-201ENST00000260810 ABCC6O95255 1503 aa8.25□□□□□ -1.09
TOPBP1-201ENST00000260810 KDM6AO15550 1401 aaPredicted RBP8.25□□□□□ -1.09
TOPBP1-201ENST00000260810 BTAF1O14981 1849 aa8.24□□□□□ -1.09
TOPBP1-201ENST00000260810 RGS17Q9UGC6 210 aaPredicted RBP8.24□□□□□ -1.09
TOPBP1-201ENST00000260810 ANKRD31Q8N7Z5 1873 aa8.24□□□□□ -1.09
TOPBP1-201ENST00000260810 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.24□□□□□ -1.09
TOPBP1-201ENST00000260810 NUP98P52948 1817 aa8.24□□□□□ -1.09
TOPBP1-201ENST00000260810 PPP2R1AP30153 589 aa8.23□□□□□ -1.09
TOPBP1-201ENST00000260810 NME9Q86XW9 330 aa8.23□□□□□ -1.09
TOPBP1-201ENST00000260810 AMOTL2Q9Y2J4 779 aa8.23□□□□□ -1.09
TOPBP1-201ENST00000260810 DCHS1Q96JQ0 3298 aa8.23□□□□□ -1.09
TOPBP1-201ENST00000260810 TMEM94Q12767 1356 aa8.22□□□□□ -1.09
TOPBP1-201ENST00000260810 C20orf194Q5TEA3 1177 aa8.22□□□□□ -1.09
TOPBP1-201ENST00000260810 CHD4Q14839 1912 aa8.22□□□□□ -1.09
TOPBP1-201ENST00000260810 APLP2Q06481 763 aa8.22□□□□□ -1.09
TOPBP1-201ENST00000260810 CARD11Q9BXL7 1154 aa8.22□□□□□ -1.09
TOPBP1-201ENST00000260810 AKAP11Q9UKA4 1901 aa8.22□□□□□ -1.09
TOPBP1-201ENST00000260810 CABP1Q9NZU7 370 aa8.22□□□□□ -1.09
TOPBP1-201ENST00000260810 ADAMTS8Q9UP79 889 aa8.21□□□□□ -1.09
TOPBP1-201ENST00000260810 IL13P35225 146 aa8.21□□□□□ -1.09
TOPBP1-201ENST00000260810 DCCP43146 1447 aa8.21□□□□□ -1.09
TOPBP1-201ENST00000260810 CACNA1SQ13698 1873 aa8.21□□□□□ -1.1
TOPBP1-201ENST00000260810 WASLO00401 505 aaPredicted RBP8.21□□□□□ -1.1
TOPBP1-201ENST00000260810 CDK5RAP2Q96SN8 1893 aa8.21□□□□□ -1.1
TOPBP1-201ENST00000260810 EDC4Q6P2E9 1401 aaKnown RBP8.21□□□□□ -1.1
TOPBP1-201ENST00000260810 ANKARQ7Z5J8 1434 aa8.21□□□□□ -1.1
TOPBP1-201ENST00000260810 AEBP1Q8IUX7 1158 aa8.2□□□□□ -1.1
TOPBP1-201ENST00000260810 CDK19Q9BWU1 502 aa8.2□□□□□ -1.1
TOPBP1-201ENST00000260810 COL5A2P05997 1499 aaPredicted RBP8.2□□□□□ -1.1
TOPBP1-201ENST00000260810 SOS2Q07890 1332 aaPredicted RBP8.2□□□□□ -1.1
TOPBP1-201ENST00000260810 AFDNP55196 1824 aaKnown RBP8.2□□□□□ -1.1
TOPBP1-201ENST00000260810 TNRC6CQ9HCJ0 1690 aaKnown RBP8.2□□□□□ -1.1
TOPBP1-201ENST00000260810 CENPJQ9HC77 1338 aaPredicted RBP8.19□□□□□ -1.1
TOPBP1-201ENST00000260810 NRXN2Q9P2S2 1712 aa8.19□□□□□ -1.1
TOPBP1-201ENST00000260810 AATKQ6ZMQ8 1374 aa8.19□□□□□ -1.1
TOPBP1-201ENST00000260810 EMILIN1Q9Y6C2 1016 aa8.19□□□□□ -1.1
TOPBP1-201ENST00000260810 PUS7Q96PZ0 661 aaKnown RBP8.18□□□□□ -1.1
TOPBP1-201ENST00000260810 ARID4BQ4LE39 1312 aaPredicted RBP8.18□□□□□ -1.1
TOPBP1-201ENST00000260810 BRINP3Q76B58 766 aa8.18□□□□□ -1.1
TOPBP1-201ENST00000260810 ACEP12821 1306 aa8.18□□□□□ -1.1
TOPBP1-201ENST00000260810 DUSP27Q5VZP5 1158 aa8.18□□□□□ -1.1
TOPBP1-201ENST00000260810 SLC4A9Q96Q91 983 aa8.17□□□□□ -1.1
TOPBP1-201ENST00000260810 MINK1Q8N4C8 1332 aaPredicted RBP8.17□□□□□ -1.1
TOPBP1-201ENST00000260810 CEMIPQ8WUJ3 1361 aa8.17□□□□□ -1.1
TOPBP1-201ENST00000260810 EIF4G2P78344 907 aaKnown RBP eCLIP8.17□□□□□ -1.1
TOPBP1-201ENST00000260810 RSPH6AQ9H0K4 717 aa8.17□□□□□ -1.1
TOPBP1-201ENST00000260810 NPM1P06748 294 aaKnown RBP eCLIP8.16□□□□□ -1.1
TOPBP1-201ENST00000260810 SAFB2Q14151 953 aaKnown RBP eCLIP8.16□□□□□ -1.1
TOPBP1-201ENST00000260810 ZNF853P0CG23 659 aa8.16□□□□□ -1.1
TOPBP1-201ENST00000260810 TRHP20396 242 aaPredicted RBP8.16□□□□□ -1.1
TOPBP1-201ENST00000260810 MAP3K19Q56UN5 1328 aa8.15□□□□□ -1.1
TOPBP1-201ENST00000260810 FOXO3O43524 673 aa8.15□□□□□ -1.1
TOPBP1-201ENST00000260810 COL11A2P13942 1736 aaPredicted RBP8.15□□□□□ -1.1
TOPBP1-201ENST00000260810 KANK1Q14678 1352 aa8.15□□□□□ -1.1
TOPBP1-201ENST00000260810 RLBP1P12271 317 aa8.15□□□□□ -1.11
TOPBP1-201ENST00000260810 NHSQ6T4R5 1651 aa8.15□□□□□ -1.11
TOPBP1-201ENST00000260810 COL9A3Q14050 684 aaPredicted RBP8.15□□□□□ -1.11
TOPBP1-201ENST00000260810 HSP90AB2PQ58FF8 381 aa8.15□□□□□ -1.11
TOPBP1-201ENST00000260810 KRT24Q2M2I5 525 aa8.14□□□□□ -1.11
TOPBP1-201ENST00000260810 SPEF2Q9C093 1822 aa8.14□□□□□ -1.11
TOPBP1-201ENST00000260810 ACIN1Q9UKV3 1341 aaKnown RBP8.14□□□□□ -1.11
TOPBP1-201ENST00000260810 FER1L6Q2WGJ9 1857 aa8.13□□□□□ -1.11
TOPBP1-201ENST00000260810 NUDT16Q96DE0 195 aaKnown RBP8.13□□□□□ -1.11
TOPBP1-201ENST00000260810 NCOA3Q9Y6Q9 1424 aa8.13□□□□□ -1.11
TOPBP1-201ENST00000260810 ATAD2Q6PL18 1390 aa8.13□□□□□ -1.11
TOPBP1-201ENST00000260810 KIF13BQ9NQT8 1826 aa8.12□□□□□ -1.11
TOPBP1-201ENST00000260810 STK26Q9P289 416 aa8.12□□□□□ -1.11
TOPBP1-201ENST00000260810 LAMA4Q16363 1823 aa8.12□□□□□ -1.11
TOPBP1-201ENST00000260810 GGNBP2Q9H3C7 697 aa8.12□□□□□ -1.11
TOPBP1-201ENST00000260810 TTC21BQ7Z4L5 1316 aa8.12□□□□□ -1.11
TOPBP1-201ENST00000260810 TNS2Q63HR2 1409 aa8.11□□□□□ -1.11
TOPBP1-201ENST00000260810 PRAMEF22A3QJZ6 481 aa8.11□□□□□ -1.11
TOPBP1-201ENST00000260810 QSER1Q2KHR3 1735 aa8.11□□□□□ -1.11
TOPBP1-201ENST00000260810 ADAMTSL1Q8N6G6 1762 aa8.11□□□□□ -1.11
TOPBP1-201ENST00000260810 BRD4O60885 1362 aaPredicted RBP8.11□□□□□ -1.11
TOPBP1-201ENST00000260810 MYH3P11055 1940 aa8.1□□□□□ -1.11
TOPBP1-201ENST00000260810 RRS1Q15050 365 aaKnown RBP8.1□□□□□ -1.11
TOPBP1-201ENST00000260810 IGSF1Q8N6C5 1336 aa8.1□□□□□ -1.11
TOPBP1-201ENST00000260810 FAM83GA6ND36 823 aa8.1□□□□□ -1.11
TOPBP1-201ENST00000260810 LRP5O75197 1615 aa8.1□□□□□ -1.11
TOPBP1-201ENST00000260810 ATP10DQ9P241 1426 aa8.1□□□□□ -1.11
TOPBP1-201ENST00000260810 TSPYL6Q8N831 410 aa8.1□□□□□ -1.11
TOPBP1-201ENST00000260810 ZNF326Q5BKZ1 582 aaKnown RBP8.09□□□□□ -1.11
TOPBP1-201ENST00000260810 SCN7AQ01118 1682 aa8.09□□□□□ -1.12
TOPBP1-201ENST00000260810 EIF4A2Q14240 407 aaKnown RBP8.08□□□□□ -1.12
TOPBP1-201ENST00000260810 SIRT2Q8IXJ6 389 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms