RNA–Protein interactions for RNA: ENST00000258607.9

CKAP2-201, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CKAP2, Length 3,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-201ENST00000258607 MYOM2P54296 1465 aa11.48□□□□□ -0.57
CKAP2-201ENST00000258607 WDR63Q8IWG1 891 aa11.48□□□□□ -0.57
CKAP2-201ENST00000258607 UPF2Q9HAU5 1272 aaKnown RBP11.48□□□□□ -0.57
CKAP2-201ENST00000258607 QRICH2Q9H0J4 1663 aa11.48□□□□□ -0.57
CKAP2-201ENST00000258607 POLR1AO95602 1720 aaPredicted RBP11.48□□□□□ -0.57
CKAP2-201ENST00000258607 A2ML1A8K2U0 1454 aa11.48□□□□□ -0.57
CKAP2-201ENST00000258607 IL13P35225 146 aa11.48□□□□□ -0.57
CKAP2-201ENST00000258607 MAP4K4O95819 1239 aaPredicted RBP11.48□□□□□ -0.57
CKAP2-201ENST00000258607 FOXD4L6Q3SYB3 417 aaPredicted RBP11.48□□□□□ -0.57
CKAP2-201ENST00000258607 FOXD4L3Q6VB84 417 aaPredicted RBP11.48□□□□□ -0.57
CKAP2-201ENST00000258607 ANKLE2Q86XL3 938 aa11.48□□□□□ -0.57
CKAP2-201ENST00000258607 EYA1Q99502 592 aa11.48□□□□□ -0.57
CKAP2-201ENST00000258607 TMEM2Q9UHN6 1383 aa11.48□□□□□ -0.57
CKAP2-201ENST00000258607 ABCC11Q96J66 1382 aa11.47□□□□□ -0.57
CKAP2-201ENST00000258607 PIK3C2BO00750 1634 aa11.47□□□□□ -0.57
CKAP2-201ENST00000258607 C8orf34Q49A92 452 aa11.47□□□□□ -0.57
CKAP2-201ENST00000258607 NEXMIFQ5QGS0 1516 aa11.47□□□□□ -0.57
CKAP2-201ENST00000258607 ARAP3Q8WWN8 1544 aa11.47□□□□□ -0.57
CKAP2-201ENST00000258607 IQGAP1P46940 1657 aa11.46□□□□□ -0.57
CKAP2-201ENST00000258607 ADGRB1O14514 1584 aa11.46□□□□□ -0.57
CKAP2-201ENST00000258607 OTUD7AQ8TE49 926 aaPredicted RBP11.46□□□□□ -0.57
CKAP2-201ENST00000258607 EXOC6BQ9Y2D4 811 aa11.46□□□□□ -0.57
CKAP2-201ENST00000258607 IPO8O15397 1037 aaKnown RBP11.46□□□□□ -0.58
CKAP2-201ENST00000258607 PHF8Q9UPP1 1060 aa11.45□□□□□ -0.58
CKAP2-201ENST00000258607 KCNQ3O43525 872 aa11.45□□□□□ -0.58
CKAP2-201ENST00000258607 GNAI1P63096 354 aa11.45□□□□□ -0.58
CKAP2-201ENST00000258607 PDE3AQ14432 1141 aa11.45□□□□□ -0.58
CKAP2-201ENST00000258607 STRN4Q9NRL3 753 aa11.45□□□□□ -0.58
CKAP2-201ENST00000258607 SBNO2Q9Y2G9 1366 aa11.45□□□□□ -0.58
CKAP2-201ENST00000258607 SLC39A6Q13433 755 aa11.45□□□□□ -0.58
CKAP2-201ENST00000258607 ALKQ9UM73 1620 aa11.44□□□□□ -0.58
CKAP2-201ENST00000258607 VAMP4O75379 141 aa11.44□□□□□ -0.58
CKAP2-201ENST00000258607 MEIS3Q99687 375 aa11.44□□□□□ -0.58
CKAP2-201ENST00000258607 LGR6Q9HBX8 967 aa11.44□□□□□ -0.58
CKAP2-201ENST00000258607 FRAT2O75474 233 aaPredicted RBP11.44□□□□□ -0.58
CKAP2-201ENST00000258607 PNNQ9H307 717 aaKnown RBP11.44□□□□□ -0.58
CKAP2-201ENST00000258607 DDX19BQ9UMR2 479 aa11.44□□□□□ -0.58
CKAP2-201ENST00000258607 VWDEQ8N2E2 1590 aa11.44□□□□□ -0.58
CKAP2-201ENST00000258607 INSRP06213 1382 aa11.44□□□□□ -0.58
CKAP2-201ENST00000258607 PTPRMP28827 1452 aa11.44□□□□□ -0.58
CKAP2-201ENST00000258607 DEPDC5O75140 1603 aa11.44□□□□□ -0.58
CKAP2-201ENST00000258607 TRMT2AQ8IZ69 625 aaKnown RBP11.44□□□□□ -0.58
CKAP2-201ENST00000258607 IL1RAPL2Q9NP60 686 aa11.44□□□□□ -0.58
CKAP2-201ENST00000258607 KDM2BQ8NHM5 1336 aa11.43□□□□□ -0.58
CKAP2-201ENST00000258607 DIP2BQ9P265 1576 aa11.43□□□□□ -0.58
CKAP2-201ENST00000258607 MYL6BP14649 208 aa11.43□□□□□ -0.58
CKAP2-201ENST00000258607 ZNF692Q9BU19 519 aaPredicted RBP11.43□□□□□ -0.58
CKAP2-201ENST00000258607 PRAMEF22A3QJZ6 481 aa11.42□□□□□ -0.58
CKAP2-201ENST00000258607 STK31Q9BXU1 1019 aa11.42□□□□□ -0.58
CKAP2-201ENST00000258607 TEFQ10587 303 aa11.42□□□□□ -0.58
CKAP2-201ENST00000258607 RBM42Q9BTD8 480 aaKnown RBP11.42□□□□□ -0.58
CKAP2-201ENST00000258607 MYOM1P52179 1685 aa11.41□□□□□ -0.58
CKAP2-201ENST00000258607 ZNF530Q6P9A1 599 aaPredicted RBP11.41□□□□□ -0.58
CKAP2-201ENST00000258607 RILPL2Q969X0 211 aa11.41□□□□□ -0.58
CKAP2-201ENST00000258607 PHAXQ9H814 394 aaKnown RBP11.41□□□□□ -0.58
CKAP2-201ENST00000258607 OS9Q13438 667 aaPredicted RBP11.41□□□□□ -0.58
CKAP2-201ENST00000258607 CPS1P31327 1500 aa11.41□□□□□ -0.58
CKAP2-201ENST00000258607 TRIM6-TRIM34B2RNG4 842 aa11.41□□□□□ -0.58
CKAP2-201ENST00000258607 DDX54Q8TDD1 881 aaKnown RBP11.41□□□□□ -0.58
CKAP2-201ENST00000258607 NBPF6Q5VWK0 638 aa11.4□□□□□ -0.58
CKAP2-201ENST00000258607 SYTL4Q96C24 671 aaPredicted RBP11.4□□□□□ -0.58
CKAP2-201ENST00000258607 NBPF4Q96M43 638 aa11.4□□□□□ -0.58
CKAP2-201ENST00000258607 CCDC85AQ96PX6 553 aaPredicted RBP11.4□□□□□ -0.58
CKAP2-201ENST00000258607 LARP6Q9BRS8 491 aaKnown RBP11.4□□□□□ -0.58
CKAP2-201ENST00000258607 RICTORQ6R327 1708 aa11.39□□□□□ -0.59
CKAP2-201ENST00000258607 HDGFL1Q5TGJ6 251 aa11.39□□□□□ -0.59
CKAP2-201ENST00000258607 NPC1L1Q9UHC9 1359 aa11.39□□□□□ -0.59
CKAP2-201ENST00000258607 ATF3P18847 181 aa11.39□□□□□ -0.59
CKAP2-201ENST00000258607 CHMP3Q9Y3E7 222 aa11.39□□□□□ -0.59
CKAP2-201ENST00000258607 KIF16BQ96L93 1317 aa11.39□□□□□ -0.59
CKAP2-201ENST00000258607 PPLO60437 1756 aa11.38□□□□□ -0.59
CKAP2-201ENST00000258607 UTRNP46939 3433 aa11.38□□□□□ -0.59
CKAP2-201ENST00000258607 CFAP44Q96MT7 982 aa11.38□□□□□ -0.59
CKAP2-201ENST00000258607 SIL1Q9H173 461 aa11.38□□□□□ -0.59
CKAP2-201ENST00000258607 PTCD1O75127 700 aaKnown RBP11.38□□□□□ -0.59
CKAP2-201ENST00000258607 MS4A1P11836 297 aa11.37□□□□□ -0.59
CKAP2-201ENST00000258607 MRPL50Q8N5N7 158 aaKnown RBP11.37□□□□□ -0.59
CKAP2-201ENST00000258607 CD163L1Q9NR16 1453 aa11.37□□□□□ -0.59
CKAP2-201ENST00000258607 PREX1Q8TCU6 1659 aa11.37□□□□□ -0.59
CKAP2-201ENST00000258607 HOXC9P31274 260 aa11.37□□□□□ -0.59
CKAP2-201ENST00000258607 PTPRUQ92729 1446 aa11.37□□□□□ -0.59
CKAP2-201ENST00000258607 NFKBIBQ15653 356 aa11.37□□□□□ -0.59
CKAP2-201ENST00000258607 CFAP74Q9C0B2 1584 aa11.37□□□□□ -0.59
CKAP2-201ENST00000258607 LMOD3Q0VAK6 560 aa11.36□□□□□ -0.59
CKAP2-201ENST00000258607 KRT28Q7Z3Y7 464 aa11.36□□□□□ -0.59
CKAP2-201ENST00000258607 AXIN2Q9Y2T1 843 aa11.36□□□□□ -0.59
CKAP2-201ENST00000258607 FAM177BA6PVY3 158 aa11.36□□□□□ -0.59
CKAP2-201ENST00000258607 C1orf141Q5JVX7 400 aa11.36□□□□□ -0.59
CKAP2-201ENST00000258607 CHD1LQ86WJ1 897 aa11.36□□□□□ -0.59
CKAP2-201ENST00000258607 NUTM1Q86Y26 1132 aa11.36□□□□□ -0.59
CKAP2-201ENST00000258607 LMTK2Q8IWU2 1503 aa11.35□□□□□ -0.59
CKAP2-201ENST00000258607 ARHGEF40Q8TER5 1519 aa11.35□□□□□ -0.59
CKAP2-201ENST00000258607 ARHGAP31Q2M1Z3 1444 aa11.35□□□□□ -0.59
CKAP2-201ENST00000258607 TMEM131LA2VDJ0 1609 aa11.35□□□□□ -0.59
CKAP2-201ENST00000258607 DDRGK1Q96HY6 314 aa11.35□□□□□ -0.59
CKAP2-201ENST00000258607 C22orf23Q9BZE7 217 aa11.35□□□□□ -0.59
CKAP2-201ENST00000258607 NRXN1Q9ULB1 1477 aa11.35□□□□□ -0.59
CKAP2-201ENST00000258607 CALD1Q05682 793 aaKnown RBP11.35□□□□□ -0.59
CKAP2-201ENST00000258607 IL17REQ8NFR9 667 aa11.35□□□□□ -0.59
CKAP2-201ENST00000258607 ZBTB40Q9NUA8 1239 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 177.9 ms