RNA–Protein interactions for RNA: ENST00000257262.12

TMEM258-201, Transcript of transmembrane protein 258, humanhuman

TSL 3

Gene TMEM258, Length 468 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM258-201ENST00000257262 ZRANB1Q9UGI0 708 aa11.87□□□□□ -0.51
TMEM258-201ENST00000257262 EDC4Q6P2E9 1401 aaKnown RBP11.86□□□□□ -0.51
TMEM258-201ENST00000257262 SLIT3O75094 1523 aa11.86□□□□□ -0.51
TMEM258-201ENST00000257262 NRAPQ86VF7 1730 aa11.86□□□□□ -0.51
TMEM258-201ENST00000257262 NME9Q86XW9 330 aa11.86□□□□□ -0.51
TMEM258-201ENST00000257262 GJD4Q96KN9 370 aaPredicted RBP11.86□□□□□ -0.51
TMEM258-201ENST00000257262 ANKRD36BQ8N2N9 1353 aa11.85□□□□□ -0.51
TMEM258-201ENST00000257262 C11orf95C9JLR9 678 aaPredicted RBP11.85□□□□□ -0.51
TMEM258-201ENST00000257262 PITPNM1O00562 1244 aa11.85□□□□□ -0.51
TMEM258-201ENST00000257262 POLR3GLQ9BT43 218 aa11.85□□□□□ -0.51
TMEM258-201ENST00000257262 USP54Q70EL1 1684 aa11.84□□□□□ -0.51
TMEM258-201ENST00000257262 CPDO75976 1380 aa11.84□□□□□ -0.51
TMEM258-201ENST00000257262 USP31Q70CQ4 1352 aa11.84□□□□□ -0.51
TMEM258-201ENST00000257262 ZBTB7CA1YPR0 619 aa11.84□□□□□ -0.51
TMEM258-201ENST00000257262 SOX12O15370 315 aa11.84□□□□□ -0.51
TMEM258-201ENST00000257262 VPS72Q15906 364 aa11.84□□□□□ -0.51
TMEM258-201ENST00000257262 KCNH5Q8NCM2 988 aa11.84□□□□□ -0.51
TMEM258-201ENST00000257262 GLI3P10071 1580 aa11.84□□□□□ -0.51
TMEM258-201ENST00000257262 CDK12Q9NYV4 1490 aaPredicted RBP11.83□□□□□ -0.52
TMEM258-201ENST00000257262 CCDC9Q9Y3X0 531 aaKnown RBP11.83□□□□□ -0.52
TMEM258-201ENST00000257262 LMO7Q8WWI1 1683 aa11.83□□□□□ -0.52
TMEM258-201ENST00000257262 CAMTA1Q9Y6Y1 1673 aa11.83□□□□□ -0.52
TMEM258-201ENST00000257262 SPDYE1Q8NFV5 336 aaPredicted RBP11.82□□□□□ -0.52
TMEM258-201ENST00000257262 CARD14Q9BXL6 1004 aa11.82□□□□□ -0.52
TMEM258-201ENST00000257262 STRN4Q9NRL3 753 aa11.82□□□□□ -0.52
TMEM258-201ENST00000257262 RGS12O14924 1447 aa11.82□□□□□ -0.52
TMEM258-201ENST00000257262 COL18A1P39060 1754 aa11.82□□□□□ -0.52
TMEM258-201ENST00000257262 RGPD5Q99666 1765 aa11.82□□□□□ -0.52
TMEM258-201ENST00000257262 EVA1CP58658 441 aa11.81□□□□□ -0.52
TMEM258-201ENST00000257262 ARHGEF25Q86VW2 580 aa11.81□□□□□ -0.52
TMEM258-201ENST00000257262 NFAT5O94916 1531 aa11.81□□□□□ -0.52
TMEM258-201ENST00000257262 LTN1O94822 1766 aa11.8□□□□□ -0.52
TMEM258-201ENST00000257262 FYB1O15117 783 aa11.8□□□□□ -0.52
TMEM258-201ENST00000257262 AXIN2Q9Y2T1 843 aa11.8□□□□□ -0.52
TMEM258-201ENST00000257262 KIF20BQ96Q89 1820 aa11.8□□□□□ -0.52
TMEM258-201ENST00000257262 AATKQ6ZMQ8 1374 aa11.79□□□□□ -0.52
TMEM258-201ENST00000257262 OVOS2A0A0J9YW53 1432 aa11.79□□□□□ -0.52
TMEM258-201ENST00000257262 OVOS2Q6IE36 1432 aa11.79□□□□□ -0.52
TMEM258-201ENST00000257262 ONECUT3O60422 494 aaPredicted RBP11.79□□□□□ -0.52
TMEM258-201ENST00000257262 COG3Q96JB2 828 aa11.79□□□□□ -0.52
TMEM258-201ENST00000257262 GGNBP2Q9H3C7 697 aa11.79□□□□□ -0.52
TMEM258-201ENST00000257262 SPATA31A5Q5VU36 1347 aa11.79□□□□□ -0.52
TMEM258-201ENST00000257262 SPATA31A7Q8IWB4 1347 aa11.79□□□□□ -0.52
TMEM258-201ENST00000257262 BRWD3Q6RI45 1802 aa11.79□□□□□ -0.52
TMEM258-201ENST00000257262 NSD3Q9BZ95 1437 aa11.78□□□□□ -0.52
TMEM258-201ENST00000257262 LARP1Q6PKG0 1096 aaKnown RBP11.78□□□□□ -0.52
TMEM258-201ENST00000257262 SPATA31A1Q5TZJ5 1347 aa11.78□□□□□ -0.52
TMEM258-201ENST00000257262 COL5A2P05997 1499 aaPredicted RBP11.77□□□□□ -0.52
TMEM258-201ENST00000257262 FBLN1P23142 703 aa11.77□□□□□ -0.53
TMEM258-201ENST00000257262 FAM98CQ17RN3 349 aaKnown RBP11.77□□□□□ -0.53
TMEM258-201ENST00000257262 SEPT12Q8IYM1 358 aa11.77□□□□□ -0.53
TMEM258-201ENST00000257262 PANK3Q9H999 370 aa11.77□□□□□ -0.53
TMEM258-201ENST00000257262 USP35Q9P2H5 1018 aa11.77□□□□□ -0.53
TMEM258-201ENST00000257262 KIF7Q2M1P5 1343 aa11.77□□□□□ -0.53
TMEM258-201ENST00000257262 A0A0G2JS52 829 aa11.75□□□□□ -0.53
TMEM258-201ENST00000257262 MYT1Q01538 1121 aa11.75□□□□□ -0.53
TMEM258-201ENST00000257262 TOM1L2Q6ZVM7 507 aa11.74□□□□□ -0.53
TMEM258-201ENST00000257262 WDR17Q8IZU2 1322 aa11.74□□□□□ -0.53
TMEM258-201ENST00000257262 CRB1P82279 1406 aa11.74□□□□□ -0.53
TMEM258-201ENST00000257262 ABCC6O95255 1503 aa11.73□□□□□ -0.53
TMEM258-201ENST00000257262 CSB-PGBD3P0DP91 1061 aa11.73□□□□□ -0.53
TMEM258-201ENST00000257262 CGNL1Q0VF96 1302 aa11.73□□□□□ -0.53
TMEM258-201ENST00000257262 MAP3K19Q56UN5 1328 aa11.73□□□□□ -0.53
TMEM258-201ENST00000257262 UPF1Q92900 1129 aaKnown RBP eCLIP11.73□□□□□ -0.53
TMEM258-201ENST00000257262 ANKRD26Q9UPS8 1709 aa11.73□□□□□ -0.53
TMEM258-201ENST00000257262 THSD7AQ9UPZ6 1657 aa11.73□□□□□ -0.53
TMEM258-201ENST00000257262 CLEC11AQ9Y240 323 aa11.73□□□□□ -0.53
TMEM258-201ENST00000257262 CCDC7Q96M83 1385 aa11.72□□□□□ -0.53
TMEM258-201ENST00000257262 WASHC2AQ641Q2 1341 aa11.72□□□□□ -0.53
TMEM258-201ENST00000257262 RRS1Q15050 365 aaKnown RBP11.72□□□□□ -0.53
TMEM258-201ENST00000257262 BARGINQ6ZT62 677 aa11.72□□□□□ -0.53
TMEM258-201ENST00000257262 PIP4P2Q8N4L2 257 aa11.72□□□□□ -0.53
TMEM258-201ENST00000257262 TCP11L2Q8N4U5 519 aa11.72□□□□□ -0.53
TMEM258-201ENST00000257262 IP6K1Q92551 441 aa11.72□□□□□ -0.53
TMEM258-201ENST00000257262 THRAP3Q9Y2W1 955 aaKnown RBP11.72□□□□□ -0.53
TMEM258-201ENST00000257262 SPDYE4A6NLX3 237 aa11.71□□□□□ -0.53
TMEM258-201ENST00000257262 HOXC9P31274 260 aa11.71□□□□□ -0.53
TMEM258-201ENST00000257262 AMPHP49418 695 aa11.71□□□□□ -0.53
TMEM258-201ENST00000257262 FXR2P51116 673 aaKnown RBP eCLIP11.71□□□□□ -0.53
TMEM258-201ENST00000257262 KRT27Q7Z3Y8 459 aa11.71□□□□□ -0.53
TMEM258-201ENST00000257262 MAP2P11137 1827 aaKnown RBP11.71□□□□□ -0.54
TMEM258-201ENST00000257262 BLMP54132 1417 aaPredicted RBP11.7□□□□□ -0.54
TMEM258-201ENST00000257262 WNK3Q9BYP7 1800 aa11.7□□□□□ -0.54
TMEM258-201ENST00000257262 ERBB3P21860 1342 aa11.7□□□□□ -0.54
TMEM258-201ENST00000257262 ANKRD24Q8TF21 1146 aa11.7□□□□□ -0.54
TMEM258-201ENST00000257262 CARD10Q9BWT7 1032 aa11.7□□□□□ -0.54
TMEM258-201ENST00000257262 KNSTRNQ9Y448 316 aa11.7□□□□□ -0.54
TMEM258-201ENST00000257262 PEAK1Q9H792 1746 aa11.69□□□□□ -0.54
TMEM258-201ENST00000257262 PARP4Q9UKK3 1724 aaKnown RBP11.69□□□□□ -0.54
TMEM258-201ENST00000257262 FAM182BQ5T319 152 aa11.69□□□□□ -0.54
TMEM258-201ENST00000257262 LTV1Q96GA3 475 aaPredicted RBP11.69□□□□□ -0.54
TMEM258-201ENST00000257262 RGPD2P0DJD1 1756 aa11.69□□□□□ -0.54
TMEM258-201ENST00000257262 PER1O15534 1290 aaPredicted RBP11.68□□□□□ -0.54
TMEM258-201ENST00000257262 NLRP2Q9NX02 1062 aa11.68□□□□□ -0.54
TMEM258-201ENST00000257262 TNNT2P45379 298 aaPredicted RBP11.67□□□□□ -0.54
TMEM258-201ENST00000257262 PDE3BQ13370 1112 aa11.67□□□□□ -0.54
TMEM258-201ENST00000257262 HSP90AB2PQ58FF8 381 aa11.67□□□□□ -0.54
TMEM258-201ENST00000257262 EMILIN1Q9Y6C2 1016 aa11.67□□□□□ -0.54
TMEM258-201ENST00000257262 FAM208AQ9UK61 1670 aaKnown RBP11.67□□□□□ -0.54
TMEM258-201ENST00000257262 RTL1A6NKG5 1358 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms