RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 MEX3CQ5U5Q3 659 aaKnown RBP36.74■■■■□ 3.47
CHMP4B-201ENST00000217402 IP6K1Q92551 441 aa36.72■■■■□ 3.47
CHMP4B-201ENST00000217402 KIF24Q5T7B8 1368 aa36.72■■■■□ 3.47
CHMP4B-201ENST00000217402 HSP90AB2PQ58FF8 381 aa36.71■■■■□ 3.47
CHMP4B-201ENST00000217402 COL18A1P39060 1754 aa36.71■■■■□ 3.47
CHMP4B-201ENST00000217402 COL14A1Q05707 1796 aaKnown RBP36.71■■■■□ 3.47
CHMP4B-201ENST00000217402 C8orf37Q96NL8 207 aa36.7■■■■□ 3.47
CHMP4B-201ENST00000217402 AXIN2Q9Y2T1 843 aa36.7■■■■□ 3.47
CHMP4B-201ENST00000217402 LMO7Q8WWI1 1683 aa36.69■■■■□ 3.46
CHMP4B-201ENST00000217402 ABCC6O95255 1503 aa36.68■■■■□ 3.46
CHMP4B-201ENST00000217402 CFAP53Q96M91 514 aa36.67■■■■□ 3.46
CHMP4B-201ENST00000217402 BLMP54132 1417 aaPredicted RBP36.66■■■■□ 3.46
CHMP4B-201ENST00000217402 PLCH1Q4KWH8 1693 aa36.66■■■■□ 3.46
CHMP4B-201ENST00000217402 CAMTA1Q9Y6Y1 1673 aa36.66■■■■□ 3.46
CHMP4B-201ENST00000217402 INSRP06213 1382 aa36.65■■■■□ 3.46
CHMP4B-201ENST00000217402 LTV1Q96GA3 475 aaPredicted RBP36.65■■■■□ 3.46
CHMP4B-201ENST00000217402 NGLY1Q96IV0 654 aa36.65■■■■□ 3.46
CHMP4B-201ENST00000217402 BTG4Q9NY30 223 aa36.65■■■■□ 3.46
CHMP4B-201ENST00000217402 RGPD5Q99666 1765 aa36.65■■■■□ 3.46
CHMP4B-201ENST00000217402 CCDC184Q52MB2 194 aa36.64■■■■□ 3.46
CHMP4B-201ENST00000217402 COL3A1P02461 1466 aaPredicted RBP36.62■■■■□ 3.45
CHMP4B-201ENST00000217402 ANKRD24Q8TF21 1146 aa36.6■■■■□ 3.45
CHMP4B-201ENST00000217402 MRS2Q9HD23 443 aa36.59■■■■□ 3.45
CHMP4B-201ENST00000217402 COL5A2P05997 1499 aaPredicted RBP36.59■■■■□ 3.45
CHMP4B-201ENST00000217402 STRN4Q9NRL3 753 aa36.59■■■■□ 3.45
CHMP4B-201ENST00000217402 SLIT2O94813 1529 aa36.58■■■■□ 3.45
CHMP4B-201ENST00000217402 ERBB3P21860 1342 aa36.58■■■■□ 3.45
CHMP4B-201ENST00000217402 EIF4A2Q14240 407 aaKnown RBP36.58■■■■□ 3.45
CHMP4B-201ENST00000217402 DIAPH1O60610 1272 aaKnown RBP36.57■■■■□ 3.44
CHMP4B-201ENST00000217402 CSB-PGBD3P0DP91 1061 aa36.56■■■■□ 3.44
CHMP4B-201ENST00000217402 EVA1CP58658 441 aa36.55■■■■□ 3.44
CHMP4B-201ENST00000217402 NWD2Q9ULI1 1742 aa36.55■■■■□ 3.44
CHMP4B-201ENST00000217402 IL13P35225 146 aa36.53■■■■□ 3.44
CHMP4B-201ENST00000217402 NRAPQ86VF7 1730 aa36.53■■■■□ 3.44
CHMP4B-201ENST00000217402 AFF2P51816 1311 aa36.53■■■■□ 3.44
CHMP4B-201ENST00000217402 CCER2I3L3R5 266 aa36.52■■■■□ 3.44
CHMP4B-201ENST00000217402 FNBP4Q8N3X1 1017 aaPredicted RBP36.52■■■■□ 3.44
CHMP4B-201ENST00000217402 WDR17Q8IZU2 1322 aa36.5■■■■□ 3.43
CHMP4B-201ENST00000217402 BCL9LQ86UU0 1499 aa36.5■■■■□ 3.43
CHMP4B-201ENST00000217402 LARP1Q6PKG0 1096 aaKnown RBP36.49■■■■□ 3.43
CHMP4B-201ENST00000217402 USP21Q9UK80 565 aa36.49■■■■□ 3.43
CHMP4B-201ENST00000217402 U2SURPO15042 1029 aaKnown RBP36.48■■■■□ 3.43
CHMP4B-201ENST00000217402 UNC5CLQ8IV45 518 aa36.48■■■■□ 3.43
CHMP4B-201ENST00000217402 NLRP2Q9NX02 1062 aa36.48■■■■□ 3.43
CHMP4B-201ENST00000217402 NUDCQ9Y266 331 aa36.47■■■■□ 3.43
CHMP4B-201ENST00000217402 TOM1L2Q6ZVM7 507 aa36.46■■■■□ 3.43
CHMP4B-201ENST00000217402 RGPD2P0DJD1 1756 aa36.45■■■■□ 3.43
CHMP4B-201ENST00000217402 NBPF6Q5VWK0 638 aa36.45■■■■□ 3.42
CHMP4B-201ENST00000217402 NBPF4Q96M43 638 aa36.45■■■■□ 3.42
CHMP4B-201ENST00000217402 EYA1Q99502 592 aa36.45■■■■□ 3.42
CHMP4B-201ENST00000217402 FAM208AQ9UK61 1670 aaKnown RBP36.44■■■■□ 3.42
CHMP4B-201ENST00000217402 USHBP1Q8N6Y0 703 aa36.44■■■■□ 3.42
CHMP4B-201ENST00000217402 CRB1P82279 1406 aa36.42■■■■□ 3.42
CHMP4B-201ENST00000217402 RGPD1P0DJD0 1748 aa36.41■■■■□ 3.42
CHMP4B-201ENST00000217402 WDR43Q15061 677 aaKnown RBP eCLIP36.41■■■■□ 3.42
CHMP4B-201ENST00000217402 TNKS1BP1Q9C0C2 1729 aaKnown RBP36.41■■■■□ 3.42
CHMP4B-201ENST00000217402 U2AF1L5P0DN76 240 aaPredicted RBP36.41■■■■□ 3.42
CHMP4B-201ENST00000217402 U2AF1Q01081 240 aaKnown RBP eCLIP36.41■■■■□ 3.42
CHMP4B-201ENST00000217402 IGSF1Q8N6C5 1336 aa36.4■■■■□ 3.42
CHMP4B-201ENST00000217402 USP35Q9P2H5 1018 aa36.4■■■■□ 3.42
CHMP4B-201ENST00000217402 CCDC9Q9Y3X0 531 aaKnown RBP36.4■■■■□ 3.42
CHMP4B-201ENST00000217402 HMOX1P09601 288 aa36.37■■■■□ 3.41
CHMP4B-201ENST00000217402 PNISRQ8TF01 805 aaKnown RBP36.37■■■■□ 3.41
CHMP4B-201ENST00000217402 AEBP1Q8IUX7 1158 aa36.37■■■■□ 3.41
CHMP4B-201ENST00000217402 VPS72Q15906 364 aa36.36■■■■□ 3.41
CHMP4B-201ENST00000217402 SULT6B1Q6IMI4 303 aa36.36■■■■□ 3.41
CHMP4B-201ENST00000217402 CARD10Q9BWT7 1032 aa36.36■■■■□ 3.41
CHMP4B-201ENST00000217402 FAM9BQ8IZU0 186 aa36.34■■■■□ 3.41
CHMP4B-201ENST00000217402 SPATA31A5Q5VU36 1347 aa36.33■■■■□ 3.41
CHMP4B-201ENST00000217402 SPATA31A7Q8IWB4 1347 aa36.33■■■■□ 3.41
CHMP4B-201ENST00000217402 PHF23Q9BUL5 403 aaPredicted RBP36.33■■■■□ 3.41
CHMP4B-201ENST00000217402 SPATA31A1Q5TZJ5 1347 aa36.32■■■■□ 3.41
CHMP4B-201ENST00000217402 ADAMTS8Q9UP79 889 aa36.32■■■■□ 3.4
CHMP4B-201ENST00000217402 ATRNO75882 1429 aa36.32■■■■□ 3.4
CHMP4B-201ENST00000217402 NCAPD2Q15021 1401 aa36.32■■■■□ 3.4
CHMP4B-201ENST00000217402 ZNF772Q68DY9 489 aaPredicted RBP36.31■■■■□ 3.4
CHMP4B-201ENST00000217402 TRPC5Q9UL62 973 aaPredicted RBP36.31■■■■□ 3.4
CHMP4B-201ENST00000217402 QTRT2Q9H974 415 aaKnown RBP36.29■■■■□ 3.4
CHMP4B-201ENST00000217402 KDRP35968 1356 aa36.28■■■■□ 3.4
CHMP4B-201ENST00000217402 TCP11L2Q8N4U5 519 aa36.27■■■■□ 3.4
CHMP4B-201ENST00000217402 RSPH6AQ9H0K4 717 aa36.26■■■■□ 3.39
CHMP4B-201ENST00000217402 PRKAR2BP31323 418 aa36.24■■■■□ 3.39
CHMP4B-201ENST00000217402 GJD4Q96KN9 370 aaPredicted RBP36.24■■■■□ 3.39
CHMP4B-201ENST00000217402 RGS17Q9UGC6 210 aaPredicted RBP36.24■■■■□ 3.39
CHMP4B-201ENST00000217402 FCHSD2O94868 740 aa36.23■■■■□ 3.39
CHMP4B-201ENST00000217402 RAPGEF4Q8WZA2 1011 aa36.23■■■■□ 3.39
CHMP4B-201ENST00000217402 MEGF6O75095 1541 aa36.22■■■■□ 3.39
CHMP4B-201ENST00000217402 GLI3P10071 1580 aa36.22■■■■□ 3.39
CHMP4B-201ENST00000217402 CCDC146Q8IYE0 955 aa36.21■■■■□ 3.39
CHMP4B-201ENST00000217402 THRAP3Q9Y2W1 955 aaKnown RBP36.21■■■■□ 3.39
CHMP4B-201ENST00000217402 IL2RBP14784 551 aa36.19■■■■□ 3.38
CHMP4B-201ENST00000217402 FAM98CQ17RN3 349 aaKnown RBP36.19■■■■□ 3.38
CHMP4B-201ENST00000217402 TATP17735 454 aaPredicted RBP36.18■■■■□ 3.38
CHMP4B-201ENST00000217402 WNK3Q9BYP7 1800 aa36.18■■■■□ 3.38
CHMP4B-201ENST00000217402 DISP2A7MBM2 1401 aa36.17■■■■□ 3.38
CHMP4B-201ENST00000217402 BARGINQ6ZT62 677 aa36.16■■■■□ 3.38
CHMP4B-201ENST00000217402 PLEKHF1Q96S99 279 aa36.15■■■■□ 3.38
CHMP4B-201ENST00000217402 PNNQ9H307 717 aaKnown RBP36.15■■■■□ 3.38
CHMP4B-201ENST00000217402 PARP4Q9UKK3 1724 aaKnown RBP36.15■■■■□ 3.38
CHMP4B-201ENST00000217402 OVOS2A0A0G2JMS6 1433 aa36.13■■■■□ 3.37
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms