RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Nap1l2P51860 460 aa19.45■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Eif5P59325 429 aaKnown RBP19.45■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Gm10471E9Q1C7 252 aa19.45■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 BcanQ61361 883 aa19.44■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Pdcl2Q78Y63 240 aa19.44■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Tdrd9Q14BI7 1383 aa19.43■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Hook3Q8BUK6 718 aa19.43■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 TatQ8QZR1 454 aa19.43■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Atf3Q60765 181 aa19.43■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Nup88Q8CEC0 753 aaKnown RBP19.43■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Nol12Q8BG17 217 aa19.43■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Smg7Q5RJH6 1138 aaKnown RBP19.42■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Dydc1Q9D9T0 175 aa19.42■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Ccdc39Q9D5Y1 937 aa19.42■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Fsd1Q7TPM6 496 aa19.42■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Gnl2Q99LH1 728 aaKnown RBP19.42■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Trap1aP19473 224 aa19.42■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Ift57Q8BXG3 429 aa19.42■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Brms1Q99N20 246 aa19.42■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Znf710Q3U288 666 aa19.41■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Gimap6Q8K349 305 aa19.41■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Nol7Q9D7Z3 254 aaKnown RBP19.41■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Tspyl3Q3UYP3 334 aa19.41■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Zscan20B2KFW1 1030 aa19.41■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Ccdc191J3QQ27 883 aa19.41■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Trim34bJ3QNR8 485 aa19.41■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Gm44503E9PYU5 387 aa19.4■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Fchsd2Q3USJ8 740 aa19.4■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Mctp1E9PV86 951 aa19.4■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 Kcnj4P52189 445 aa19.4■□□□□ 0.7
Ccdc88a-201ENSMUST00000040182 BbxQ8VBW5 907 aa19.39■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Olr1Q9EQ09 363 aa19.39■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 NrkQ9R0G8 1455 aa19.39■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Trim30cD3YVI9 513 aa19.39■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Stxbp4Q9WV89 557 aa19.39■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Rnf187Q8BFX1 236 aa19.39■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Zfp444Q3TDV8 331 aaKnown RBP19.39■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Kif18aQ91WD7 886 aa19.38■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 IbtkQ6ZPR6 1352 aaKnown RBP19.38■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Abcf1Q6P542 837 aaKnown RBP19.38■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Fsd2Q8BZ52 692 aa19.38■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Rbm10Q99KG3 930 aaKnown RBP19.38■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Ncapg2Q6DFV1 1138 aa19.38■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 ImmtQ8CAQ8 757 aaKnown RBP19.38■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 TchhA0A0B4J1F9 1599 aa19.38■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Ccdc172Q810N9 267 aa19.38■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Srgap3Q812A2 1099 aa19.38■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Ddx19aQ61655 478 aaKnown RBP19.37■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Atp2b2Q9R0K7 1198 aa19.37■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Abl1P00520 1123 aa19.37■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 DesP31001 469 aaKnown RBP19.37■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Gsdma2Q32M21 443 aa19.37■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Puf60Q3UEB3 564 aaKnown RBP19.37■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Trim11Q99PQ2 467 aa19.37■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Ankrd1Q9CR42 319 aa19.37■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Nectin2P32507 530 aa19.36■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Lrrfip2Q91WK0 415 aa19.36■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Nf2P46662 596 aa19.36■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Ncapd3Q6ZQK0 1506 aa19.36■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 CarsQ9ER72 831 aaKnown RBP19.36■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Gm18336A0A140LIU8 765 aa19.36■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Map2k1P31938 393 aa19.36■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 ImpactO55091 318 aa19.36■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Ppp2r1aQ76MZ3 589 aa19.36■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Smc1aQ9CU62 1233 aaKnown RBP19.36■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Ccdc112A0AUP1 442 aa19.35■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 IkQ9Z1M8 557 aaKnown RBP19.35■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Jakmip1Q8BVL9 626 aa19.35■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Ctage5Q8R311 779 aa19.35■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Clul1Q3ZRW6 464 aa19.35■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Acbd3Q8BMP6 525 aa19.35■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Luzp1Q8R4U7 1068 aaKnown RBP19.35■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Gm1979E9QAN3 267 aa19.34■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Hs1bp3Q3TC93 395 aa19.34■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Arhgap31A6X8Z5 1425 aa19.34■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Naa15Q80UM3 865 aaKnown RBP19.34■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Smc1bQ920F6 1248 aa19.34■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Gm21671G3UY31 267 aa19.34■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Fbf1A2A870 1173 aa19.34■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Znf287Q9EQB9 759 aa19.33■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Map3k7clP58500 142 aa19.33■□□□□ 0.69
Ccdc88a-201ENSMUST00000040182 Cct4P80315 539 aaKnown RBP19.33■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 Maats1Q8BRC6 783 aa19.33■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 Wwc1Q5SXA9 1104 aa19.33■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 Nutm1Q8BHP2 1126 aa19.33■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 Flad1Q8R123 492 aa19.32■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 Jakmip3Q5DTN8 844 aa19.32■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 Tmc1Q8R4P5 757 aa19.32■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 Fez2Q6TYB5 348 aa19.31■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 Iqca1Q9CUL5 857 aa19.31■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 EprsQ8CGC7 1512 aaKnown RBP19.31■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 Tsg101Q61187 391 aa19.31■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 Bms1Q6PGF5 1284 aaKnown RBP19.31■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 MvpQ9EQK5 861 aa19.31■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 Ssr1Q9CY50 286 aaKnown RBP19.31■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 Gm42641I6L9G2 585 aa19.3■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 Tubb4bP68372 445 aaKnown RBP19.3■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 Gbp8Q2V6D6 525 aa19.3■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 Jade2Q6ZQF7 829 aa19.3■□□□□ 0.68
Ccdc88a-201ENSMUST00000040182 AtripQ8BMG1 785 aa19.3■□□□□ 0.68
Retrieved 100 of 22,080 RNA–protein pairs in 20.2 ms