RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 GRIN3AQ8TCU5 1115 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 PIH1D2Q8WWB5 315 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 PRCCQ92733 491 aaPredicted RBP12.42□□□□□ -0.42
LINC00339-213ENST00000642137 SIPA1Q96FS4 1042 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 IFT43Q96FT9 208 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 SNF8Q96H20 258 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 PPP1R16AQ96I34 528 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 TRIB3Q96RU7 358 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 ADGRE3Q9BY15 652 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 TRIM31Q9BZY9 425 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 MKRN2Q9H000 416 aaKnown RBP12.42□□□□□ -0.42
LINC00339-213ENST00000642137 EPHX3Q9H6B9 360 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 ARNT2Q9HBZ2 717 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 POLR3BQ9NW08 1133 aaPredicted RBP12.42□□□□□ -0.42
LINC00339-213ENST00000642137 CHKBQ9Y259 395 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 TCRBV21S2A2A0A5A6 115 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 C16orf96A6NNT2 1141 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 ANKRD66B4E2M5 251 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 AP3B1O00203 1094 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 KPNA3O00505 521 aaPredicted RBP12.41□□□□□ -0.42
LINC00339-213ENST00000642137 SEC31AO94979 1220 aaKnown RBP12.41□□□□□ -0.42
LINC00339-213ENST00000642137 NDST3O95803 873 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 AGTP01019 485 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 DNTTP04053 509 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 APRTP07741 180 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 PDHA1P08559 390 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 GABRG2P18507 467 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 HLA-DPA1P20036 260 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 NFKBIAP25963 317 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 ITGB7P26010 798 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 TNNT3P45378 269 aaPredicted RBP12.41□□□□□ -0.42
LINC00339-213ENST00000642137 CCR3P51677 355 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 SUOXP51687 545 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 GUCY2DQ02846 1103 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 CAV1Q03135 178 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 CALCOCO2Q13137 446 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 MORF4L2Q15014 288 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 SLC1A5Q15758 541 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 PCSK7Q16549 785 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 TEX35Q5T0J7 233 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 CFAP58Q5T655 872 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 HIBCHQ6NVY1 386 aaPredicted RBP12.41□□□□□ -0.42
LINC00339-213ENST00000642137 LRRC8BQ6P9F7 803 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 FBXL6Q8N531 539 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 TSTD1Q8NFU3 115 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 IPMKQ8NFU5 416 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 ARRDC3Q96B67 414 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 MRGPRX1Q96LB2 322 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 TBL1YQ9BQ87 522 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 FICDQ9BVA6 458 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 FSD1LQ9BXM9 530 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 HDAC8Q9BY41 377 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 DPH5Q9H2P9 285 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 EPB41L5Q9HCM4 733 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 DYRK4Q9NR20 520 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 FAM114A2Q9NRY5 505 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 C2orf42Q9NWW7 574 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 ANAPC5Q9UJX4 755 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 PCDHB9Q9Y5E1 797 aa12.41□□□□□ -0.42
LINC00339-213ENST00000642137 TCRBV7S3A2A0A539 114 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 MID1O15344 667 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 CPP00450 1065 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 RHOXF2BP0C7M4 288 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 ACADMP11310 421 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 MLNP12872 115 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 TIMP2P16035 220 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 NDUFV2P19404 249 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 PSMD8P48556 350 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 ITGA8P53708 1063 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 SPARCL1Q14515 664 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 UGP2Q16851 508 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 ANKRD22Q5VYY1 191 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 DENND5AQ6IQ26 1287 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 USP30Q70CQ3 517 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 ERN2Q76MJ5 926 aaKnown RBP12.4□□□□□ -0.42
LINC00339-213ENST00000642137 KDELC2Q7Z4H8 507 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 TTC7BQ86TV6 843 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 KBTBD6Q86V97 674 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 RASSF3Q86WH2 238 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 IFT20Q8IY31 132 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 PDCD6IPQ8WUM4 868 aaKnown RBP12.4□□□□□ -0.42
LINC00339-213ENST00000642137 UBXN4Q92575 508 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 ART4Q93070 314 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 RAB7BQ96AH8 199 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 RMDN1Q96DB5 314 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 ERLEC1Q96DZ1 483 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 SRPK1Q96SB4 655 aaKnown RBP12.4□□□□□ -0.42
LINC00339-213ENST00000642137 RHOXF2Q9BQY4 288 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 COL25A1Q9BXS0 654 aaPredicted RBP12.4□□□□□ -0.42
LINC00339-213ENST00000642137 FRMD8Q9BZ67 464 aaPredicted RBP12.4□□□□□ -0.42
LINC00339-213ENST00000642137 FAM129AQ9BZQ8 928 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 PABPC3Q9H361 631 aaKnown RBP12.4□□□□□ -0.42
LINC00339-213ENST00000642137 CASS4Q9NQ75 786 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 ITM2CQ9NQX7 267 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 GDF3Q9NR23 364 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 GRHL1Q9NZI5 618 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 EBF1Q9UH73 591 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 NCKAP1Q9Y2A7 1128 aa12.4□□□□□ -0.42
LINC00339-213ENST00000642137 NCOR1O75376 2440 aa12.39□□□□□ -0.43
LINC00339-213ENST00000642137 A0A0J9YYE9 177 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms