RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 LRRC8EQ6NSJ5 796 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 PIM3Q86V86 326 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 AUTS2Q8WXX7 1259 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 NSMCE3Q96MG7 304 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 GPR78Q96P69 363 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 VN1R3Q9BXE9 311 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.71□□□□□ -0.694e-7■■■■■ 40.8
CUX1-221ENST00000622516 C15orf41Q9Y2V0 281 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 XIRP2A4UGR9 3374 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 AP3B1O00203 1094 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 KLKB1P03952 638 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 TSPAN8P19075 237 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 KCNA5P22460 613 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 DNAJB2P25686 324 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 SERPINB5P36952 375 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 NRG1Q02297 640 aaPredicted RBP10.71□□□□□ -0.7
CUX1-221ENST00000622516 MSLNQ13421 630 aaPredicted RBP10.71□□□□□ -0.7
CUX1-221ENST00000622516 FRG1Q14331 258 aaKnown RBP10.71□□□□□ -0.7
CUX1-221ENST00000622516 RCN1Q15293 331 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 PDCD2Q16342 344 aaPredicted RBP10.71□□□□□ -0.7
CUX1-221ENST00000622516 SPOUT1Q5T280 376 aaKnown RBP10.71□□□□□ -0.7
CUX1-221ENST00000622516 TSTD2Q5T7W7 516 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 TMC7Q7Z402 723 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 TMPRSS6Q8IU80 811 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 CNTN4Q8IWV2 1026 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 C2CD4AQ8NCU7 369 aaPredicted RBP10.71□□□□□ -0.7
CUX1-221ENST00000622516 OR13C4Q8NGS5 318 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 ANKRD49Q8WVL7 239 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 PHF21BQ96EK2 531 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 RNF38Q9H0F5 515 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 CDH19Q9H159 772 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 PHF24Q9UPV7 400 aa10.71□□□□□ -0.7
CUX1-221ENST00000622516 EYSQ5T1H1 3165 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 HEATR9A2RTY3 570 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 F5H5T6 163 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 TBC1D4O60343 1298 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 HNRNPCL1O60812 293 aaKnown RBP10.7□□□□□ -0.7
CUX1-221ENST00000622516 SPATA31D3P0C874 917 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 PAMP19021 973 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 ATP5C1P36542 298 aaKnown RBP10.7□□□□□ -0.7
CUX1-221ENST00000622516 RGRP47804 291 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 SCNN1BP51168 640 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 PRAMEP78395 509 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 ZNF235Q14590 738 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 UGP2Q16851 508 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 SPATA31D4Q6ZUB0 917 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 DNAJC1Q96KC8 554 aaKnown RBP10.7□□□□□ -0.7
CUX1-221ENST00000622516 UBE2OQ9C0C9 1292 aaKnown RBP10.7□□□□□ -0.7
CUX1-221ENST00000622516 HIPK3Q9H422 1215 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 C2orf78A6NCI8 922 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 PDE5AO76074 875 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 ATXN1LP0C7T5 689 aaKnown RBP10.7□□□□□ -0.7
CUX1-221ENST00000622516 CCDC166P0CW27 439 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 TFEBP19484 476 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 PTDSS1P48651 473 aaKnown RBP10.7□□□□□ -0.7
CUX1-221ENST00000622516 CSRP3P50461 194 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 EPHB1P54762 984 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 LIPMQ5VYY2 423 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 TRIM68Q6AZZ1 485 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 NXNQ6DKJ4 435 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 KIAA0930Q6ICG6 404 aaPredicted RBP10.7□□□□□ -0.7
CUX1-221ENST00000622516 LINGO4Q6UY18 593 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 ZYG11AQ6WRX3 759 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 ANKS3Q6ZW76 656 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 CRIPAKQ8N1N5 446 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 RYBPQ8N488 228 aaPredicted RBP10.7□□□□□ -0.7
CUX1-221ENST00000622516 TXNDC5Q8NBS9 432 aaKnown RBP10.7□□□□□ -0.7
CUX1-221ENST00000622516 HIPK4Q8NE63 616 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 EXT2Q93063 718 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 CCDC124Q96CT7 223 aaKnown RBP10.7□□□□□ -0.7
CUX1-221ENST00000622516 IFT43Q96FT9 208 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 ILKAPQ9H0C8 392 aaPredicted RBP10.7□□□□□ -0.7
CUX1-221ENST00000622516 ELAC1Q9H777 363 aaKnown RBP10.7□□□□□ -0.7
CUX1-221ENST00000622516 GPAMQ9HCL2 828 aa10.7□□□□□ -0.7
CUX1-221ENST00000622516 DRGXA6NNA5 263 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 COCHO43405 550 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 IGLV3-27P01718 113 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 VEGFBP49765 207 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 CDKN2DP55273 166 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 PPM1LQ5SGD2 360 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 WASHC2DQ5SRD0 308 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 EPGNQ6UW88 154 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 TMEM207Q6UWW9 146 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 SCUBE1Q8IWY4 988 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 ULK2Q8IYT8 1036 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 LSMEM2Q8N112 164 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 STYXQ8WUJ0 223 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 ZNF570Q96NI8 536 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 OLA1Q9NTK5 396 aaKnown RBP10.69□□□□□ -0.7
CUX1-221ENST00000622516 NSMCE4AQ9NXX6 385 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 SLC7A8Q9UHI5 535 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 WASF2Q9Y6W5 498 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 PLXNA3P51805 1871 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 TARM1B6A8C7 271 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 CBX4O00257 560 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 LDB2O43679 373 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 KLHL2O95198 593 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 KCNC1P48547 511 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 IL10RBQ08334 325 aa10.69□□□□□ -0.7
CUX1-221ENST00000622516 PLD1Q13393 1074 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms