RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 PER2O15055 1255 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 UGT2B4P06133 528 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 ALADP13716 330 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 TFEBP19484 476 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 TALDO1P37837 337 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 ECM1Q16610 540 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 PACS1Q6VY07 963 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 NELL1Q92832 810 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 ABCG8Q9H221 673 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 ERAL1O75616 437 aaKnown RBP11.44□□□□□ -0.58
CLIP1-219ENST00000620786 MYL12AP19105 171 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 TACR2P21452 398 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 RAB10P61026 200 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 TBX2Q13207 712 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-219ENST00000620786 TSNQ15631 228 aaKnown RBP11.44□□□□□ -0.58
CLIP1-219ENST00000620786 PARP15Q460N3 678 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 RFWD3Q6PCD5 774 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 BNIPLQ7Z465 357 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 SNX32Q86XE0 403 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 SERHL2Q9H4I8 314 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 ZFP14Q9HCL3 533 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 SERHLQ9NQF3 203 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 EVLQ9UI08 416 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-219ENST00000620786 DMGDHQ9UI17 866 aaKnown RBP11.44□□□□□ -0.58
CLIP1-219ENST00000620786 MKL2Q9ULH7 1088 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 VPS4AQ9UN37 437 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 LYVE1Q9Y5Y7 322 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 PHLPP1O60346 1717 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 DLGAP3O95886 979 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 PRNPP04156 253 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 ACADSP16219 412 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 SYN1P17600 705 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 PTPN4P29074 926 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 RPL3P39023 403 aaKnown RBP11.44□□□□□ -0.58
CLIP1-219ENST00000620786 TAF8Q7Z7C8 310 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 SCLYQ96I15 445 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 VPS45Q9NRW7 570 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 SUCOQ9UBS9 1254 aaKnown RBP11.44□□□□□ -0.58
CLIP1-219ENST00000620786 ZFP37Q9Y6Q3 630 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-219ENST00000620786 NCANO14594 1321 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 CYP3A5P20815 502 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 RPL22P35268 128 aaKnown RBP11.44□□□□□ -0.58
CLIP1-219ENST00000620786 INTS11Q5TA45 600 aaKnown RBP11.44□□□□□ -0.58
CLIP1-219ENST00000620786 UBE2R2Q712K3 238 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-219ENST00000620786 SH3RF1Q7Z6J0 888 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 KRT77Q7Z794 578 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 OR52L1Q8NGH7 329 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 TIFAQ96CG3 184 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 MARK4Q96L34 752 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 TNKS2Q9H2K2 1166 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 ANGPT4Q9Y264 503 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 TBC1D30Q9Y2I9 924 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 AP4S1Q9Y587 144 aa11.44□□□□□ -0.58
CLIP1-219ENST00000620786 LOC102724159A0A0B4J2E5 919 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 LRRC72A6NJI9 287 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 E9PAM4 449 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 PEX11AO75192 247 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 FSBPO95073 299 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 LYPLA2O95372 231 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 NR2F1P10589 423 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 HGFP14210 728 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 SERPINB1P30740 379 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 RPL38P63173 70 aaKnown RBP11.43□□□□□ -0.58
CLIP1-219ENST00000620786 PWP2Q15269 919 aaKnown RBP11.43□□□□□ -0.58
CLIP1-219ENST00000620786 PRSS55Q6UWB4 352 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-219ENST00000620786 ADAMTSL2Q86TH1 951 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 NDRG1Q92597 394 aaKnown RBP11.43□□□□□ -0.58
CLIP1-219ENST00000620786 APOL4Q9BPW4 351 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 TMEM79Q9BSE2 394 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 SLC25A23Q9BV35 468 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 POLMQ9NP87 494 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-219ENST00000620786 ERVW-1Q9UQF0 538 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 CHKBQ9Y259 395 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 SLIT3O75094 1523 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 MED1Q15648 1581 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-219ENST00000620786 GLYATL1P3A0A0U1RQE8 302 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 TMEM191CA6NGB0 347 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 B4GALT4O60513 344 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 CAPN1P07384 714 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 ANXA6P08133 673 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 PSMB9P28065 219 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 PRKCIP41743 596 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 SRSF11Q05519 484 aaKnown RBP11.43□□□□□ -0.58
CLIP1-219ENST00000620786 GPM6BQ13491 265 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 CYP2R1Q6VVX0 501 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-219ENST00000620786 GALNT13Q8IUC8 556 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 RNASE11Q8TAA1 199 aaKnown RBP11.43□□□□□ -0.58
CLIP1-219ENST00000620786 HERVK_113Q902F9 699 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 HDAC10Q969S8 669 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 SPATA5L1Q9BVQ7 753 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 ACAT2Q9BWD1 397 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 B3GNT5Q9BYG0 378 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 EPS8L2Q9H6S3 715 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 MRPS33Q9Y291 106 aaKnown RBP11.43□□□□□ -0.58
CLIP1-219ENST00000620786 BTRCQ9Y297 605 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 PCDHGC5Q9Y5F6 944 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 C15orf38-AP3S2A0A0A6YYH1 394 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 FCHO1O14526 889 aa11.43□□□□□ -0.58
CLIP1-219ENST00000620786 MYL12BO14950 172 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms