RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 ARRDC2Q8TBH0 407 aa12.51□□□□□ -0.41
CIITA-212ENST00000618207 HEXDCQ8WVB3 486 aa12.51□□□□□ -0.41
CIITA-212ENST00000618207 PHF21BQ96EK2 531 aa12.51□□□□□ -0.41
CIITA-212ENST00000618207 DOCK6Q96HP0 2047 aa12.51□□□□□ -0.41
CIITA-212ENST00000618207 OR52B2Q96RD2 323 aa12.51□□□□□ -0.41
CIITA-212ENST00000618207 MCMBPQ9BTE3 642 aa12.51□□□□□ -0.41
CIITA-212ENST00000618207 IRAK4Q9NWZ3 460 aa12.51□□□□□ -0.41
CIITA-212ENST00000618207 DNMT3LQ9UJW3 386 aa12.51□□□□□ -0.41
CIITA-212ENST00000618207 PACSIN3Q9UKS6 424 aa12.51□□□□□ -0.41
CIITA-212ENST00000618207 TRAFD1O14545 582 aaPredicted RBP12.5□□□□□ -0.41
CIITA-212ENST00000618207 COCHO43405 550 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 DLX3O60479 287 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 KLKB1P03952 638 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 HNRNPLP14866 589 aaKnown RBP eCLIP12.5□□□□□ -0.41
CIITA-212ENST00000618207 CDC25CP30307 473 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 RGRP47804 291 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 HARS2P49590 506 aaKnown RBP12.5□□□□□ -0.41
CIITA-212ENST00000618207 NRG1Q02297 640 aaPredicted RBP12.5□□□□□ -0.41
CIITA-212ENST00000618207 TLE2Q04725 743 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 TUBB3Q13509 450 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 NAIF1Q69YI7 327 aaPredicted RBP12.5□□□□□ -0.41
CIITA-212ENST00000618207 KIRREL3Q8IZU9 778 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.5□□□□□ -0.41
CIITA-212ENST00000618207 ISL2Q96A47 359 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 DNAJC1Q96KC8 554 aaKnown RBP12.5□□□□□ -0.41
CIITA-212ENST00000618207 RNF38Q9H0F5 515 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 TRPC7Q9HCX4 862 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 OXSMQ9NWU1 459 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 ZNF212Q9UDV6 495 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 TAGLN3Q9UI15 199 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 PCDHB12Q9Y5F1 795 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 PLXNA3P51805 1871 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 IGLV3-10A0A075B6K4 115 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 TBC1D4O60343 1298 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 ACSL4O60488 711 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 JUNP05412 331 aaKnown RBP12.5□□□□□ -0.41
CIITA-212ENST00000618207 CCDC166P0CW27 439 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 CORO1AP31146 461 aaKnown RBP12.5□□□□□ -0.41
CIITA-212ENST00000618207 ELAVL2Q12926 359 aaKnown RBP12.5□□□□□ -0.41
CIITA-212ENST00000618207 KRT72Q14CN4 511 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 USP41Q3LFD5 358 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 TRIM60Q495X7 471 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 TMC7Q7Z402 723 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 LRRC43Q8N309 656 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 SREK1Q8WXA9 508 aaKnown RBP12.5□□□□□ -0.41
CIITA-212ENST00000618207 RMDN1Q96DB5 314 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 UBE2OQ9C0C9 1292 aaKnown RBP12.5□□□□□ -0.41
CIITA-212ENST00000618207 POLR1EQ9GZS1 481 aaKnown RBP12.5□□□□□ -0.41
CIITA-212ENST00000618207 NSMCE4AQ9NXX6 385 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 ZDHHC2Q9UIJ5 367 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 ATP11BQ9Y2G3 1177 aa12.5□□□□□ -0.41
CIITA-212ENST00000618207 FNDC1Q4ZHG4 1894 aaPredicted RBP12.5□□□□□ -0.41
CIITA-212ENST00000618207 COL4A4P53420 1690 aaPredicted RBP12.49□□□□□ -0.41
CIITA-212ENST00000618207 C5orf42Q9H799 3197 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 KRT36O76013 467 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 SORBS2O94875 1100 aaKnown RBP12.49□□□□□ -0.41
CIITA-212ENST00000618207 ARSAP15289 507 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 SERPINB5P36952 375 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 EPHB1P54762 984 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 ACSBG2Q5FVE4 666 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 RALGPS1Q5JS13 557 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 KIAA0930Q6ICG6 404 aaPredicted RBP12.49□□□□□ -0.41
CIITA-212ENST00000618207 LRRC49Q8IUZ0 686 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 TMEM151AQ8N4L1 468 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 C2CD4AQ8NCU7 369 aaPredicted RBP12.49□□□□□ -0.41
CIITA-212ENST00000618207 CCDC124Q96CT7 223 aaKnown RBP12.49□□□□□ -0.41
CIITA-212ENST00000618207 CLSTN3Q9BQT9 956 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 TUBB6Q9BUF5 446 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 MRPL9Q9BYD2 267 aaKnown RBP12.49□□□□□ -0.41
CIITA-212ENST00000618207 CDH19Q9H159 772 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 GPAMQ9HCL2 828 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 NOP53Q9NZM5 478 aaKnown RBP12.49□□□□□ -0.41
CIITA-212ENST00000618207 ZNF195O14628 629 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 COL6A1P12109 1028 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 IL10RBQ08334 325 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 CCDC6Q16204 474 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 TMEM198Q66K66 360 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 MIEF2Q96C03 454 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 SPATA17Q96L03 361 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 ILKAPQ9H0C8 392 aaPredicted RBP12.49□□□□□ -0.41
CIITA-212ENST00000618207 RNPEPL1Q9HAU8 725 aa12.49□□□□□ -0.41
CIITA-212ENST00000618207 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.49□□□□□ -0.41
CIITA-212ENST00000618207 ZNF840PA6NDX5 716 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 DRGXA6NNA5 263 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 PITPNM1O00562 1244 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 ZBTB14O43829 449 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 SKAP2O75563 359 aaPredicted RBP12.48□□□□□ -0.41
CIITA-212ENST00000618207 MT-CO1P00395 513 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 IGLV3-27P01718 113 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 KCNA5P22460 613 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 GNA12Q03113 381 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 CDK18Q07002 472 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 PREPLQ4J6C6 727 aaPredicted RBP12.48□□□□□ -0.41
CIITA-212ENST00000618207 FBXO48Q5FWF7 155 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 HECTD3Q5T447 861 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 LIPMQ5VYY2 423 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 KLHL23Q8NBE8 558 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 TXNDC5Q8NBS9 432 aaKnown RBP12.48□□□□□ -0.41
CIITA-212ENST00000618207 HIPK4Q8NE63 616 aa12.48□□□□□ -0.41
CIITA-212ENST00000618207 NAT14Q8WUY8 206 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms