RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 HNF1BP35680 557 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 DCTP40126 519 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 CCR2P41597 374 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 GRIA3P42263 894 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 NLRP11P59045 1033 aaKnown RBP4.69□□□□□ -1.66
LINC00540-201ENST00000611481 CDK17Q00537 523 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 FCHO2Q0JRZ9 810 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 TARDBPQ13148 414 aaKnown RBP eCLIP4.69□□□□□ -1.66
LINC00540-201ENST00000611481 DDX10Q13206 875 aaKnown RBP4.69□□□□□ -1.66
LINC00540-201ENST00000611481 PDCD1Q15116 288 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.69□□□□□ -1.66
LINC00540-201ENST00000611481 TSTD2Q5T7W7 516 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 JAKMIP3Q5VZ66 844 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 LMBRD2Q68DH5 695 aaPredicted RBP4.69□□□□□ -1.66
LINC00540-201ENST00000611481 FUT10Q6P4F1 479 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 PGM2L1Q6PCE3 622 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 HAUS6Q7Z4H7 955 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 RABEPKQ7Z6M1 372 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 CLASRPQ8N2M8 674 aaKnown RBP4.69□□□□□ -1.66
LINC00540-201ENST00000611481 PQLC1Q8N2U9 271 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 SLC35G2Q8TBE7 412 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 STON2Q8WXE9 905 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 MARS2Q96GW9 593 aaKnown RBP4.69□□□□□ -1.66
LINC00540-201ENST00000611481 CNOT6LQ96LI5 555 aaKnown RBP4.69□□□□□ -1.66
LINC00540-201ENST00000611481 TBATAQ96M53 351 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 ACAP3Q96P50 834 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 CLSTN3Q9BQT9 956 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 IL21RQ9HBE5 538 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 VAT1LQ9HCJ6 419 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 LANCL2Q9NS86 450 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 FBXO34Q9NWN3 711 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 PAG1Q9NWQ8 432 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 POLG2Q9UHN1 485 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 EDARQ9UNE0 448 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 BOD1L1Q8NFC6 3051 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 ADGRG4Q8IZF6 3080 aa4.69□□□□□ -1.66
LINC00540-201ENST00000611481 MED13Q9UHV7 2174 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 HIVEP1P15822 2718 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 DYTNA2CJ06 578 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 VPS37CA5D8V6 355 aaPredicted RBP4.68□□□□□ -1.66
LINC00540-201ENST00000611481 GCOM1H8Y6P7 765 aaPredicted RBP4.68□□□□□ -1.66
LINC00540-201ENST00000611481 ZNF197O14709 1029 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 KCNAB3O43448 404 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 EPB41L2O43491 1005 aaKnown RBP4.68□□□□□ -1.66
LINC00540-201ENST00000611481 CSDE1O75534 798 aaKnown RBP4.68□□□□□ -1.66
LINC00540-201ENST00000611481 STAM2O75886 525 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 AGFG2O95081 481 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 GNAI2P04899 355 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 POLR2MP0CAP2 368 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 KCNA2P16389 499 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 RHCEP18577 417 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 U2AF2P26368 475 aaKnown RBP eCLIP4.68□□□□□ -1.66
LINC00540-201ENST00000611481 P2RY2P41231 377 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 ALDH1A3P47895 512 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 NOVP48745 357 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 CLCN3P51790 818 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 SESN3P58005 492 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 KRTAP10-7P60409 375 aaPredicted RBP4.68□□□□□ -1.66
LINC00540-201ENST00000611481 GHRHRQ02643 423 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 GRIK2Q13002 908 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 TBX2Q13207 712 aaPredicted RBP4.68□□□□□ -1.66
LINC00540-201ENST00000611481 ODF1Q14990 250 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 PDCD2Q16342 344 aaPredicted RBP4.68□□□□□ -1.66
LINC00540-201ENST00000611481 PSMD5Q16401 504 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 ITPRIPL2Q3MIP1 535 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 LINC00303Q3SY05 128 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 FCRLBQ6BAA4 426 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 MZT2AQ6P582 158 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 VWA1Q6PCB0 445 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 LVRNQ6Q4G3 990 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 B3GNT9Q6UX72 402 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 USP49Q70CQ1 688 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 PEG10Q86TG7 708 aaKnown RBP4.68□□□□□ -1.66
LINC00540-201ENST00000611481 CEP57Q86XR8 500 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 GPR65Q8IYL9 337 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 ADGRF4Q8IZF3 695 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 OLIG1Q8TAK6 271 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 SPATA20Q8TB22 786 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 KCNE4Q8WWG9 221 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 COLEC11Q9BWP8 271 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 TRPV4Q9HBA0 871 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 FBRSL1Q9HCM7 1045 aaKnown RBP4.68□□□□□ -1.66
LINC00540-201ENST00000611481 MKS1Q9NXB0 559 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 HSFX1Q9UBD0 423 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 BTBD3Q9Y2F9 522 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 WNT6Q9Y6F9 365 aa4.68□□□□□ -1.66
LINC00540-201ENST00000611481 ANKHD1Q8IWZ3 2542 aaKnown RBP4.68□□□□□ -1.66
LINC00540-201ENST00000611481 TRDMT1O14717 391 aaKnown RBP4.67□□□□□ -1.66
LINC00540-201ENST00000611481 FLRT2O43155 660 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 TEX33O43247 280 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 AP5Z1O43299 807 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 TNFSF14O43557 240 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 HBP1O60381 514 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 BCAR3O75815 825 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 C22orf31O95567 290 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 HRGP04196 525 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 SNHG28P0DPA3 235 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 MYL4P12829 197 aa4.67□□□□□ -1.66
LINC00540-201ENST00000611481 DARSP14868 501 aaKnown RBP4.67□□□□□ -1.66
LINC00540-201ENST00000611481 DRD1P21728 446 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms