RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 NCAPGQ9BPX3 1015 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 ANP32EQ9BTT0 268 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 EFHD1Q9BUP0 239 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 ASPSCR1Q9BZE9 553 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 SEMA4CQ9C0C4 833 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 GDPD2Q9HCC8 539 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 TMEM248Q9NWD8 314 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 GEMIN8Q9NWZ8 242 aaKnown RBP6.37□□□□□ -1.39
CUX1-220ENST00000607092 MPP6Q9NZW5 540 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 MFHAS1Q9Y4C4 1052 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 LOXL2Q9Y4K0 774 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 DOPEY2Q9Y3R5 2298 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 RP1P56715 2156 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 TDRD6O60522 2096 aaKnown RBP6.37□□□□□ -1.39
CUX1-220ENST00000607092 A0A1W2PQ67 120 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 ANKRD62A6NC57 917 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 STMND1H3BQB6 276 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 TERTO14746 1132 aaKnown RBP6.36□□□□□ -1.39
CUX1-220ENST00000607092 TNFRSF10CO14798 259 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 RAD51BO15315 384 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 SPINT1O43278 529 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 SUV39H1O43463 412 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 NUDT21O43809 227 aaKnown RBP6.36□□□□□ -1.39
CUX1-220ENST00000607092 ZNF821O75541 412 aaPredicted RBP6.36□□□□□ -1.39
CUX1-220ENST00000607092 GCATO75600 419 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 ENDOD1O94919 500 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 CPNE6O95741 557 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 ERBB2P04626 1255 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 UGT2B4P06133 528 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 HOXC4P09017 264 aaPredicted RBP6.36□□□□□ -1.39
CUX1-220ENST00000607092 SDC4P31431 198 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 CDH5P33151 784 aaPredicted RBP6.36□□□□□ -1.39
CUX1-220ENST00000607092 HTR7P34969 479 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 GGCXP38435 758 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 NUMBP49757 651 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 IRAK1P51617 712 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 AIF1P55008 147 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 YBEYP58557 167 aaPredicted RBP6.36□□□□□ -1.39
CUX1-220ENST00000607092 RNASE9P60153 205 aaKnown RBP6.36□□□□□ -1.39
CUX1-220ENST00000607092 RHOAP61586 193 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 POLR2LP62875 67 aaKnown RBP6.36□□□□□ -1.39
CUX1-220ENST00000607092 ARF5P84085 180 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 BIRC2Q13490 618 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 MTM1Q13496 603 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 TRA2AQ13595 282 aaKnown RBP eCLIP6.36□□□□□ -1.39
CUX1-220ENST00000607092 FGL2Q14314 439 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 NFATC4Q14934 902 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 TPD52L1Q16890 204 aaPredicted RBP6.36□□□□□ -1.39
CUX1-220ENST00000607092 TUSC1Q2TAM9 212 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 PARP15Q460N3 678 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 PTPN20Q4JDL3 420 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 PERM1Q5SV97 790 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 RWDD4Q6NW29 188 aaKnown RBP6.36□□□□□ -1.39
CUX1-220ENST00000607092 PACS2Q86VP3 889 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 CCNJLQ8IV13 435 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 HID1Q8IV36 788 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 PASD1Q8IV76 773 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 DRC7Q8IY82 874 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 WDTC1Q8N5D0 677 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 PCDH19Q8TAB3 1148 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 CCDC74AQ96AQ1 378 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 TBC1D31Q96DN5 1066 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 WDR92Q96MX6 357 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 ZNF641Q96N77 438 aaPredicted RBP6.36□□□□□ -1.39
CUX1-220ENST00000607092 KLHL32Q96NJ5 620 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 CRACR2AQ9BSW2 395 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 CPEB1Q9BZB8 566 aaKnown RBP6.36□□□□□ -1.39
CUX1-220ENST00000607092 TM6SF2Q9BZW4 377 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 TTYH3Q9C0H2 523 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 SLC25A18Q9H1K4 315 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 LRRN3Q9H3W5 708 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 KLQ9UEF7 1012 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 PISDQ9UG56 409 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 OR12D3Q9UGF7 316 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 RWDD2AQ9UIY3 292 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 ANAPC2Q9UJX6 822 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 MAN1B1Q9UKM7 699 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 CTNND2Q9UQB3 1225 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 FCF1Q9Y324 198 aaKnown RBP6.36□□□□□ -1.39
CUX1-220ENST00000607092 DAAM1Q9Y4D1 1078 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 DGKBQ9Y6T7 804 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 ABCA12Q86UK0 2595 aa6.36□□□□□ -1.39
CUX1-220ENST00000607092 ITPR2Q14571 2701 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 A0A1W2PNU3 283 aaPredicted RBP6.35□□□□□ -1.39
CUX1-220ENST00000607092 BECN2A8MW95 431 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 EIF3CLB5ME19 914 aaKnown RBP6.35□□□□□ -1.39
CUX1-220ENST00000607092 BUB1O43683 1085 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 KDELR3O43731 214 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 MMP20O60882 483 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 CALCAP01258 141 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 MYF5P13349 255 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 ADRA1BP35368 520 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 IGFALSP35858 605 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 STAT1P42224 750 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 ABL2P42684 1182 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 GPR3P46089 330 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 MTIF2P46199 727 aaKnown RBP6.35□□□□□ -1.39
CUX1-220ENST00000607092 PDX1P52945 283 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 RAB15P59190 212 aa6.35□□□□□ -1.39
CUX1-220ENST00000607092 KIAA1024LP59773 190 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms