RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 PPM1NQ8N819 430 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 OSCP1Q8WVF1 389 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 UTP4Q969X6 686 aaKnown RBP11.82□□□□□ -0.52
VRK3-223ENST00000601341 SKA1Q96BD8 255 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 RSPRY1Q96DX4 576 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 MSLNLQ96KJ4 702 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 LRRC3BQ96PB8 259 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 BBS2Q9BXC9 721 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 PLAC1Q9HBJ0 212 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 ZFP14Q9HCL3 533 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 THG1LQ9NWX6 298 aaKnown RBP11.82□□□□□ -0.52
VRK3-223ENST00000601341 DUS2Q9NX74 493 aaKnown RBP11.82□□□□□ -0.52
VRK3-223ENST00000601341 C15orf41Q9Y2V0 281 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.82□□□□□ -0.52
VRK3-223ENST00000601341 ERI2A8K979 691 aaKnown RBP11.82□□□□□ -0.52
VRK3-223ENST00000601341 VGLL3A8MV65 326 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 HEPACAM2A8MVW5 462 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 NEDD8-MDP1E9PL57 170 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 CBX4O00257 560 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 AVILO75366 819 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 NFKB1P19838 968 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 CALB2P22676 271 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 TNK2Q07912 1038 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 SLC10A7Q0GE19 358 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 SLC12A1Q13621 1099 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 RFTN1Q14699 578 aaPredicted RBP11.82□□□□□ -0.52
VRK3-223ENST00000601341 TBCCQ15814 346 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 TAF1BQ53T94 588 aaPredicted RBP11.82□□□□□ -0.52
VRK3-223ENST00000601341 LY6G5CQ5SRR4 150 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 TLDC1Q6P9B6 456 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 LRRC8BQ6P9F7 803 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 MARK2Q7KZI7 788 aaKnown RBP11.82□□□□□ -0.52
VRK3-223ENST00000601341 PRPF39Q86UA1 669 aaKnown RBP11.82□□□□□ -0.52
VRK3-223ENST00000601341 CTAGE3PQ8IX95 158 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 BBS5Q8N3I7 341 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 KIF2BQ8N4N8 673 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 ENDOVQ8N8Q3 282 aaKnown RBP11.82□□□□□ -0.52
VRK3-223ENST00000601341 GIMAP7Q8NHV1 300 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 WFDC5Q8TCV5 224 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 CDKL2Q92772 493 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 CFAP36Q96G28 342 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 RSRC1Q96IZ7 334 aaKnown RBP11.82□□□□□ -0.52
VRK3-223ENST00000601341 NECTIN4Q96NY8 510 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 FAM111AQ96PZ2 611 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 FCRL5Q96RD9 977 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 C2orf49Q9BVC5 232 aaPredicted RBP11.82□□□□□ -0.52
VRK3-223ENST00000601341 TBC1D10AQ9BXI6 508 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 STN1Q9H668 368 aaKnown RBP11.82□□□□□ -0.52
VRK3-223ENST00000601341 PDFQ9HBH1 243 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 GLOD4Q9HC38 313 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 MARK1Q9P0L2 795 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 SORCS3Q9UPU3 1222 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 OR51B4Q9Y5P0 310 aa11.82□□□□□ -0.52
VRK3-223ENST00000601341 SDR42E2A6NKP2 422 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 F5H423 210 aaPredicted RBP11.81□□□□□ -0.52
VRK3-223ENST00000601341 GOLGA8RI6L899 631 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 SOX1O00570 391 aaPredicted RBP11.81□□□□□ -0.52
VRK3-223ENST00000601341 PSMD3O43242 534 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 CACNG3O60359 315 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 ANXA9O76027 345 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 HAUS5O94927 633 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 SLC34A2O95436 690 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 ANP32DO95626 131 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 TYRP14679 529 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 TARSP26639 723 aaKnown RBP11.81□□□□□ -0.52
VRK3-223ENST00000601341 MZF1P28698 734 aaPredicted RBP11.81□□□□□ -0.52
VRK3-223ENST00000601341 CSKP41240 450 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 ZNF235Q14590 738 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 CMPK2Q5EBM0 449 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 SYCP2LQ5T4T6 812 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 OTOP3Q7RTS5 596 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 MTDHQ86UE4 582 aaKnown RBP11.81□□□□□ -0.52
VRK3-223ENST00000601341 PDCD7Q8N8D1 485 aaKnown RBP11.81□□□□□ -0.52
VRK3-223ENST00000601341 DCAF4L2Q8NA75 395 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 SMRP1Q8NCR6 262 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 PTPRN2Q92932 1015 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 ACDQ96AP0 544 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 ALG14Q96F25 216 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 STAMBPL1Q96FJ0 436 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 ZNF419Q96HQ0 510 aaPredicted RBP11.81□□□□□ -0.52
VRK3-223ENST00000601341 FAM161BQ96MY7 647 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 MYADMQ96S97 322 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 SLC2A11Q9BYW1 496 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 FAM96AQ9H5X1 160 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 RNPEPL1Q9HAU8 725 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 KCNK13Q9HB14 408 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 NT5MQ9NPB1 228 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 BATF3Q9NR55 127 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 GEMIN8Q9NWZ8 242 aaKnown RBP11.81□□□□□ -0.52
VRK3-223ENST00000601341 UBA2Q9UBT2 640 aaPredicted RBP11.81□□□□□ -0.52
VRK3-223ENST00000601341 HAO1Q9UJM8 370 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 STK38LQ9Y2H1 464 aa11.81□□□□□ -0.52
VRK3-223ENST00000601341 AAR2Q9Y312 384 aaKnown RBP11.81□□□□□ -0.52
VRK3-223ENST00000601341 HELZP42694 1942 aaKnown RBP11.8□□□□□ -0.52
VRK3-223ENST00000601341 ZMPSTE24O75844 475 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 NFATC1O95644 943 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 ADH1CP00326 375 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 HLA-DQB2P05538 268 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 LAMP2P13473 410 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 FCARP24071 287 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms