RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 NSL1Q96IY1 281 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 PAWRQ96IZ0 340 aaKnown RBP14.57□□□□□ -0.08
VRK3-217ENST00000599538 SCYL1Q96KG9 808 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 MGME1Q9BQP7 344 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 FAM167BQ9BTA0 163 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 HERC2P3Q9BVR0 1158 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 OXSMQ9NWU1 459 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 LNPEPQ9UIQ6 1025 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 ACOT9Q9Y305 439 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 PDE4DIPQ5VU43 2346 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 CBX4O00257 560 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 TEX28O15482 410 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 TRIM13O60858 407 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 RHOCP08134 193 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 SCNN1BP51168 640 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 UBAP2LQ14157 1087 aaKnown RBP14.57□□□□□ -0.08
VRK3-217ENST00000599538 TXNDC8Q6A555 127 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 LINGO4Q6UY18 593 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 CILP2Q8IUL8 1156 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 BHMTQ93088 406 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 IFT43Q96FT9 208 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 TRMT2BQ96GJ1 504 aaKnown RBP14.57□□□□□ -0.08
VRK3-217ENST00000599538 DNAJC1Q96KC8 554 aaKnown RBP14.57□□□□□ -0.08
VRK3-217ENST00000599538 TRPC7Q9HCX4 862 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 SPG21Q9NZD8 308 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 XPR1Q9UBH6 696 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 UBA2Q9UBT2 640 aaPredicted RBP14.57□□□□□ -0.08
VRK3-217ENST00000599538 ANKRD6Q9Y2G4 727 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 PCDHB12Q9Y5F1 795 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 INSL5Q9Y5Q6 135 aa14.57□□□□□ -0.08
VRK3-217ENST00000599538 DOCK6Q96HP0 2047 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 ABHD14A-ACY1A0A1B0GW23 586 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 KDELR3O43731 214 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 SNAP91O60641 907 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 CLDN11O75508 207 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 PAPSS2O95340 614 aaPredicted RBP14.56□□□□□ -0.08
VRK3-217ENST00000599538 CD160O95971 181 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 URODP06132 367 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 PRSS56P0CW18 603 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 MBL2P11226 248 aaPredicted RBP14.56□□□□□ -0.08
VRK3-217ENST00000599538 LEPRP48357 1165 aaKnown RBP14.56□□□□□ -0.08
VRK3-217ENST00000599538 OXCT1P55809 520 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 PTPRRQ15256 657 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 RNF219Q5W0B1 726 aaPredicted RBP14.56□□□□□ -0.08
VRK3-217ENST00000599538 ALG1LQ6GMV1 187 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 LRRC8EQ6NSJ5 796 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 ZYG11AQ6WRX3 759 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 ARL14EPQ8N8R7 260 aaPredicted RBP14.56□□□□□ -0.08
VRK3-217ENST00000599538 FAM13CQ8NE31 585 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 MAPK15Q8TD08 544 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 STYXQ8WUJ0 223 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 SGF29Q96ES7 293 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 FEM1CQ96JP0 617 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 PSKH2Q96QS6 385 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 TRIB3Q96RU7 358 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 BEGAINQ9BUH8 593 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 CADM1Q9BY67 442 aaKnown RBP14.56□□□□□ -0.08
VRK3-217ENST00000599538 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.56□□□□□ -0.08
VRK3-217ENST00000599538 HSFX1Q9UBD0 423 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.56□□□□□ -0.08
VRK3-217ENST00000599538 PRR5-ARHGAP8B1AHC4 643 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 DLX3O60479 287 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 F11P03951 625 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 ENO1P06733 434 aaKnown RBP14.56□□□□□ -0.08
VRK3-217ENST00000599538 PDHA1P08559 390 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 SERPINF2P08697 491 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 MZF1P28698 734 aaPredicted RBP14.56□□□□□ -0.08
VRK3-217ENST00000599538 IDH3AP50213 366 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 PRAMEP78395 509 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 SMAD3P84022 425 aaKnown RBP14.56□□□□□ -0.08
VRK3-217ENST00000599538 ARHGAP8P85298 464 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 SLC20A2Q08357 652 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 MTA1Q13330 715 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 ZNF177Q13360 481 aaPredicted RBP14.56□□□□□ -0.08
VRK3-217ENST00000599538 RIPK1Q13546 671 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 SEMA3AQ14563 771 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 KRT72Q14CN4 511 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 VEPH1Q14D04 833 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 CYTH1Q15438 398 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 OTOP2Q7RTS6 562 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 DDX53Q86TM3 631 aaKnown RBP14.56□□□□□ -0.08
VRK3-217ENST00000599538 PPP4R1Q8TF05 950 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 HEXDCQ8WVB3 486 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 ZNF333Q96JL9 665 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 ZNF599Q96NL3 588 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 CCDC106Q9BWC9 280 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 SHCBP1LQ9BZQ2 653 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 IL21Q9HBE4 155 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 TAS2R1Q9NYW7 299 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 SPO11Q9Y5K1 396 aa14.56□□□□□ -0.08
VRK3-217ENST00000599538 PLXNA4Q9HCM2 1894 aa14.55□□□□□ -0.08
VRK3-217ENST00000599538 PTPRSQ13332 1948 aa14.55□□□□□ -0.08
VRK3-217ENST00000599538 A0A0U1RQS6 177 aa14.55□□□□□ -0.08
VRK3-217ENST00000599538 A0A1B0GVM2 712 aa14.55□□□□□ -0.08
VRK3-217ENST00000599538 TCAF2A6NFQ2 919 aa14.55□□□□□ -0.08
VRK3-217ENST00000599538 NEMP2A6NFY4 417 aa14.55□□□□□ -0.08
VRK3-217ENST00000599538 SLC7A4O43246 635 aa14.55□□□□□ -0.08
VRK3-217ENST00000599538 GREM1O60565 184 aa14.55□□□□□ -0.08
VRK3-217ENST00000599538 CSPG5O95196 566 aa14.55□□□□□ -0.08
VRK3-217ENST00000599538 HSPA4LO95757 839 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms