RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 IL10RBQ08334 325 aa17.6■□□□□ 0.41
SMG6-214ENST00000573827 EIF2B5Q13144 721 aaKnown RBP17.6■□□□□ 0.41
SMG6-214ENST00000573827 SGCGQ13326 291 aa17.6■□□□□ 0.41
SMG6-214ENST00000573827 PIGHQ14442 188 aaPredicted RBP17.6■□□□□ 0.41
SMG6-214ENST00000573827 UGP2Q16851 508 aa17.6■□□□□ 0.41
SMG6-214ENST00000573827 ASTE1Q2TB18 679 aaPredicted RBP17.6■□□□□ 0.41
SMG6-214ENST00000573827 BOLA3Q53S33 107 aa17.6■□□□□ 0.41
SMG6-214ENST00000573827 CCDC157Q569K6 752 aa17.6■□□□□ 0.41
SMG6-214ENST00000573827 TMPRSS12Q86WS5 348 aa17.6■□□□□ 0.41
SMG6-214ENST00000573827 CPNE8Q86YQ8 564 aa17.6■□□□□ 0.41
SMG6-214ENST00000573827 CAMK1DQ8IU85 385 aa17.6■□□□□ 0.41
SMG6-214ENST00000573827 RFFLQ8WZ73 363 aa17.6■□□□□ 0.41
SMG6-214ENST00000573827 ZNF641Q96N77 438 aaPredicted RBP17.6■□□□□ 0.41
SMG6-214ENST00000573827 CSPG4P5Q96PW8 444 aa17.6■□□□□ 0.41
SMG6-214ENST00000573827 NUP85Q9BW27 656 aa17.6■□□□□ 0.41
SMG6-214ENST00000573827 PCDH18Q9HCL0 1135 aa17.6■□□□□ 0.41
SMG6-214ENST00000573827 PCDH12Q9NPG4 1184 aa17.6■□□□□ 0.41
SMG6-214ENST00000573827 MBNL1Q9NR56 388 aaKnown RBP17.6■□□□□ 0.41
SMG6-214ENST00000573827 IPO11Q9UI26 975 aaKnown RBP17.6■□□□□ 0.41
SMG6-214ENST00000573827 TRAFD1O14545 582 aaPredicted RBP17.59■□□□□ 0.41
SMG6-214ENST00000573827 RIOK3O14730 519 aaKnown RBP17.59■□□□□ 0.41
SMG6-214ENST00000573827 FPGTO14772 594 aa17.59■□□□□ 0.41
SMG6-214ENST00000573827 CR2P20023 1033 aa17.59■□□□□ 0.41
SMG6-214ENST00000573827 AMPD1P23109 780 aa17.59■□□□□ 0.41
SMG6-214ENST00000573827 MMP12P39900 470 aa17.59■□□□□ 0.41
SMG6-214ENST00000573827 ARSEP51690 589 aa17.59■□□□□ 0.41
SMG6-214ENST00000573827 NSUN2Q08J23 767 aaKnown RBP eCLIP17.59■□□□□ 0.41
SMG6-214ENST00000573827 ILKQ13418 452 aa17.59■□□□□ 0.41
SMG6-214ENST00000573827 ALKBH5Q6P6C2 394 aaKnown RBP17.59■□□□□ 0.41
SMG6-214ENST00000573827 SRLQ86TD4 932 aa17.59■□□□□ 0.41
SMG6-214ENST00000573827 PARGQ86W56 976 aa17.59■□□□□ 0.41
SMG6-214ENST00000573827 ZNF548Q8NEK5 533 aaPredicted RBP17.59■□□□□ 0.41
SMG6-214ENST00000573827 MDM1Q8TC05 714 aa17.59■□□□□ 0.41
SMG6-214ENST00000573827 TEKT4Q8WW24 435 aa17.59■□□□□ 0.41
SMG6-214ENST00000573827 SPOCK2Q92563 424 aa17.59■□□□□ 0.41
SMG6-214ENST00000573827 PSKH2Q96QS6 385 aa17.59■□□□□ 0.41
SMG6-214ENST00000573827 TUBGCP5Q96RT8 1024 aa17.59■□□□□ 0.41
SMG6-214ENST00000573827 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.59■□□□□ 0.41
SMG6-214ENST00000573827 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.59■□□□□ 0.41
SMG6-214ENST00000573827 PTPRQQ9UMZ3 2332 aa17.58■□□□□ 0.41
SMG6-214ENST00000573827 TRABD2BA6NFA1 517 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 GOLGA6L19H0YKK7 550 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 NEMP1O14524 444 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 SCAMP1O15126 338 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 DAPK3O43293 454 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 CDK4P11802 303 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 GM2AP17900 193 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 SLC10A7Q0GE19 358 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 RALGDSQ12967 914 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 PDE1CQ14123 709 aaPredicted RBP17.58■□□□□ 0.4
SMG6-214ENST00000573827 RFTN1Q14699 578 aaPredicted RBP17.58■□□□□ 0.4
SMG6-214ENST00000573827 GRM3Q14832 879 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 AGERQ15109 404 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 WSCD2Q2TBF2 565 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 BRAT1Q6PJG6 821 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 VPS36Q86VN1 386 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 LZTR1Q8N653 840 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 FAM181AQ8N9Y4 354 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 DNAJC7Q99615 494 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 WRAP53Q9BUR4 548 aaKnown RBP17.58■□□□□ 0.4
SMG6-214ENST00000573827 TCEAL2Q9H3H9 227 aaPredicted RBP17.58■□□□□ 0.4
SMG6-214ENST00000573827 DNAJC28Q9NX36 388 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 ANAPC7Q9UJX3 599 aa17.58■□□□□ 0.4
SMG6-214ENST00000573827 ANKRD36A6QL64 1941 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 H3BRJ5 948 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 K7ESM1 405 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 DFFAO00273 331 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 FFAR2O15552 330 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 MAFKO60675 156 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 PALMO75781 387 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 NEBLO76041 1014 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 TM7SF2O76062 418 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 PRKCGP05129 697 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 CD48P09326 243 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 CKMT1AP12532 417 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 PTMSP20962 102 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 HNRNPKP61978 463 aaKnown RBP eCLIP17.57■□□□□ 0.4
SMG6-214ENST00000573827 IRF4Q15306 451 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 PGBD5Q8N414 524 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 HSPH1Q92598 858 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 ZNF599Q96NL3 588 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 PACSIN1Q9BY11 444 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 CCDC86Q9H6F5 360 aaKnown RBP17.57■□□□□ 0.4
SMG6-214ENST00000573827 ZWILCHQ9H900 591 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 SP110Q9HB58 689 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 NLGN3Q9NZ94 848 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 IP6K2Q9UHH9 426 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 ATP8A1Q9Y2Q0 1164 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 RP1P56715 2156 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 MYLKQ15746 1914 aa17.57■□□□□ 0.4
SMG6-214ENST00000573827 MGAQ8IWI9 3026 aa17.56■□□□□ 0.4
SMG6-214ENST00000573827 MYF5P13349 255 aa17.56■□□□□ 0.4
SMG6-214ENST00000573827 C6P13671 934 aa17.56■□□□□ 0.4
SMG6-214ENST00000573827 EIF4A3P38919 411 aaKnown RBP17.56■□□□□ 0.4
SMG6-214ENST00000573827 YPEL5P62699 121 aa17.56■□□□□ 0.4
SMG6-214ENST00000573827 INSM1Q01101 510 aaPredicted RBP17.56■□□□□ 0.4
SMG6-214ENST00000573827 SEMG2Q02383 582 aa17.56■□□□□ 0.4
SMG6-214ENST00000573827 ELP6Q0PNE2 266 aa17.56■□□□□ 0.4
SMG6-214ENST00000573827 CCDC122Q5T0U0 273 aa17.56■□□□□ 0.4
SMG6-214ENST00000573827 HES3Q5TGS1 186 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms