RNA–Protein interactions for RNA: ENST00000573600.5

CTDNEP1-208, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CTDNEP1, Length 1,724 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-208ENST00000573600 CACNA2D3Q8IZS8 1091 aa29.33■■■□□ 2.29
CTDNEP1-208ENST00000573600 BLOC1S5Q8TDH9 187 aa29.33■■■□□ 2.29
CTDNEP1-208ENST00000573600 NSMCE3Q96MG7 304 aa29.33■■■□□ 2.29
CTDNEP1-208ENST00000573600 C12orf65Q9H3J6 166 aaKnown RBP29.33■■■□□ 2.29
CTDNEP1-208ENST00000573600 SNX15Q9NRS6 342 aa29.33■■■□□ 2.29
CTDNEP1-208ENST00000573600 ABCB8Q9NUT2 735 aa29.33■■■□□ 2.29
CTDNEP1-208ENST00000573600 FGFR1OP2Q9NVK5 253 aa29.33■■■□□ 2.29
CTDNEP1-208ENST00000573600 CLEC4EQ9ULY5 219 aa29.33■■■□□ 2.29
CTDNEP1-208ENST00000573600 PAPLNO95428 1278 aa29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 PDE1CQ14123 709 aaPredicted RBP29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 DUSP6Q16828 381 aa29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 COL13A1Q5TAT6 717 aaPredicted RBP29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 KYAT3Q6YP21 454 aaKnown RBP29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 MICALCLQ6ZW33 695 aa29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 ZC3HC1Q86WB0 502 aaKnown RBP29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 RNF135Q8IUD6 432 aa29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 C2CD4AQ8NCU7 369 aaPredicted RBP29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 OR13J1Q8NGT2 312 aa29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 SMG7Q92540 1137 aaKnown RBP29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 GRAMD1AQ96CP6 724 aa29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 RMDN1Q96DB5 314 aa29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 GPR22Q99680 433 aa29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 ADGRE3Q9BY15 652 aa29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 CERS4Q9HA82 394 aa29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 MTO1Q9Y2Z2 717 aaKnown RBP29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 FCF1Q9Y324 198 aaKnown RBP29.32■■■□□ 2.28
CTDNEP1-208ENST00000573600 ANKRD36A6QL64 1941 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 ATG2AQ2TAZ0 1938 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 PRAMEF12O95522 483 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 CRTAMO95727 393 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 PENKP01210 267 aaPredicted RBP29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 CEBPBP17676 345 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 CD70P32970 193 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 PBX2P40425 430 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 ACVR1Q04771 509 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 SRLQ86TD4 932 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 RIN3Q8TB24 985 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 ZNF75CPQ92670 426 aaPredicted RBP29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 LMLNQ96KR4 655 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 HSFX4A0A1B0GTS1 333 aaPredicted RBP29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 HSFX3A0A1B0GWH4 333 aaPredicted RBP29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 AHSGP02765 367 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 HNRNPH2P55795 449 aaKnown RBP29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 AP1S1P61966 158 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 STYXQ8WUJ0 223 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 IRF7Q92985 503 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 ATXN7L3BQ96GX2 97 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 PBX4Q9BYU1 374 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 PITPNM3Q9BZ71 974 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 MFSD1Q9H3U5 465 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 MSRAQ9UJ68 235 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 MYO7AQ13402 2215 aa29.31■■■□□ 2.28
CTDNEP1-208ENST00000573600 SLC9A3R1O14745 358 aaPredicted RBP29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 PRLP01236 227 aa29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 SLC1A2P43004 574 aa29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 SERPINB4P48594 390 aa29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 CSNK1DP48730 415 aa29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 PRAMEP78395 509 aa29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 ZNF470Q6ECI4 717 aa29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 GALNT7Q86SF2 657 aa29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 TMEM25Q86YD3 366 aa29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 ARID3BQ8IVW6 561 aaPredicted RBP29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 DENND6AQ8IWF6 608 aa29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 CCDC197Q8NCU1 140 aa29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 ZSWIM3Q96MP5 696 aa29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 ELAC2Q9BQ52 826 aaKnown RBP29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 SPHK2Q9NRA0 654 aa29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 GGT7Q9UJ14 662 aa29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 FBXO5Q9UKT4 447 aa29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 PCDHGC4Q9Y5F7 938 aa29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 NUP210Q8TEM1 1887 aaPredicted RBP29.3■■■□□ 2.28
CTDNEP1-208ENST00000573600 MT-CO1P00395 513 aa29.29■■■□□ 2.28
CTDNEP1-208ENST00000573600 GSTA1P08263 222 aa29.29■■■□□ 2.28
CTDNEP1-208ENST00000573600 WEE1P30291 646 aa29.29■■■□□ 2.28
CTDNEP1-208ENST00000573600 MAPK8P45983 427 aa29.29■■■□□ 2.28
CTDNEP1-208ENST00000573600 ILF2Q12905 390 aaKnown RBP29.29■■■□□ 2.28
CTDNEP1-208ENST00000573600 CTBP1Q13363 440 aa29.29■■■□□ 2.28
CTDNEP1-208ENST00000573600 RAB30Q15771 203 aa29.29■■■□□ 2.28
CTDNEP1-208ENST00000573600 ZKSCAN8Q15776 578 aaPredicted RBP29.29■■■□□ 2.28
CTDNEP1-208ENST00000573600 TRIM42Q8IWZ5 723 aa29.29■■■□□ 2.28
CTDNEP1-208ENST00000573600 KIAA1958Q8N8K9 716 aa29.29■■■□□ 2.28
CTDNEP1-208ENST00000573600 MANSC1Q9H8J5 431 aa29.29■■■□□ 2.28
CTDNEP1-208ENST00000573600 WDR91A4D1P6 747 aa29.28■■■□□ 2.28
CTDNEP1-208ENST00000573600 GABRB3P28472 473 aa29.28■■■□□ 2.28
CTDNEP1-208ENST00000573600 CD151P48509 253 aa29.28■■■□□ 2.28
CTDNEP1-208ENST00000573600 NRIP1P48552 1158 aa29.28■■■□□ 2.28
CTDNEP1-208ENST00000573600 GRM3Q14832 879 aa29.28■■■□□ 2.28
CTDNEP1-208ENST00000573600 PITRM1Q5JRX3 1037 aa29.28■■■□□ 2.28
CTDNEP1-208ENST00000573600 ANKS4BQ8N8V4 417 aa29.28■■■□□ 2.28
CTDNEP1-208ENST00000573600 ING5Q8WYH8 240 aa29.28■■■□□ 2.28
CTDNEP1-208ENST00000573600 BBS2Q9BXC9 721 aa29.28■■■□□ 2.28
CTDNEP1-208ENST00000573600 NKX2-4Q9H2Z4 354 aa29.28■■■□□ 2.28
CTDNEP1-208ENST00000573600 SFXN1Q9H9B4 322 aa29.28■■■□□ 2.28
CTDNEP1-208ENST00000573600 INTS6Q9UL03 887 aaKnown RBP29.28■■■□□ 2.28
CTDNEP1-208ENST00000573600 SNX3O60493 162 aa29.28■■■□□ 2.28
CTDNEP1-208ENST00000573600 MPP1Q00013 466 aa29.28■■■□□ 2.28
CTDNEP1-208ENST00000573600 TRAF2Q12933 501 aa29.28■■■□□ 2.28
CTDNEP1-208ENST00000573600 TAF1AQ15573 450 aaPredicted RBP29.28■■■□□ 2.28
CTDNEP1-208ENST00000573600 DBN1Q16643 649 aa29.28■■■□□ 2.28
CTDNEP1-208ENST00000573600 PPP2R2DQ66LE6 453 aa29.28■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms