RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ZDHHC6Q9H6R6 413 aa30.82■■■□□ 2.52
CTCF-203ENST00000566078 CHRAC1Q9NRG0 131 aa30.82■■■□□ 2.52
CTCF-203ENST00000566078 RPS6KL1Q9Y6S9 549 aa30.82■■■□□ 2.52
CTCF-203ENST00000566078 MAGEB16A2A368 324 aa30.81■■■□□ 2.52
CTCF-203ENST00000566078 STX2P32856 288 aa30.81■■■□□ 2.52
CTCF-203ENST00000566078 STAT4Q14765 748 aa30.81■■■□□ 2.52
CTCF-203ENST00000566078 CES3Q6UWW8 571 aa30.81■■■□□ 2.52
CTCF-203ENST00000566078 CCDC77Q9BR77 488 aa30.81■■■□□ 2.52
CTCF-203ENST00000566078 ADGRE3Q9BY15 652 aa30.81■■■□□ 2.52
CTCF-203ENST00000566078 RABGEF1Q9UJ41 708 aa30.81■■■□□ 2.52
CTCF-203ENST00000566078 TCAF1Q9Y4C2 921 aa30.81■■■□□ 2.52
CTCF-203ENST00000566078 FAM237BA0A1B0GVD1 139 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 EXOC1LA0A1B0GW35 172 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 SOCS5O75159 536 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 ASGR2P07307 311 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 SERPINA4P29622 427 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 RAD51Q06609 339 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 SPANXN3Q5MJ09 141 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 OR2A12Q8NGT7 310 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 EPS8L3Q8TE67 593 aaKnown RBP30.8■■■□□ 2.52
CTCF-203ENST00000566078 KIFC1Q9BW19 673 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 ACSS3Q9H6R3 686 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 PCDHB9Q9Y5E1 797 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 CCDC78A2IDD5 438 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 SMIM23A6NLE4 172 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 FZD6O60353 706 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 USP1O94782 785 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 ALADP13716 330 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 ADRA1DP25100 572 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 MSLNQ13421 630 aaPredicted RBP30.8■■■□□ 2.52
CTCF-203ENST00000566078 LONRF1Q17RB8 773 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 KRT71Q3SY84 523 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 ARMC12Q5T9G4 340 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 PLPP6Q8IY26 295 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 ZNF366Q8N895 744 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 CHST14Q8NCH0 376 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 TUBGCP5Q96RT8 1024 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 P2RY13Q9BPV8 354 aa30.8■■■□□ 2.52
CTCF-203ENST00000566078 MRM3Q9HC36 420 aaKnown RBP30.8■■■□□ 2.52
CTCF-203ENST00000566078 PGLSO95336 258 aa30.79■■■□□ 2.52
CTCF-203ENST00000566078 POP4O95707 220 aaKnown RBP30.79■■■□□ 2.52
CTCF-203ENST00000566078 PRKCGP05129 697 aa30.79■■■□□ 2.52
CTCF-203ENST00000566078 IVLP07476 585 aa30.79■■■□□ 2.52
CTCF-203ENST00000566078 GPS2Q13227 327 aa30.79■■■□□ 2.52
CTCF-203ENST00000566078 ZNF234Q14588 700 aa30.79■■■□□ 2.52
CTCF-203ENST00000566078 EFTUD2Q15029 972 aaKnown RBP eCLIP30.79■■■□□ 2.52
CTCF-203ENST00000566078 PKN3Q6P5Z2 889 aa30.79■■■□□ 2.52
CTCF-203ENST00000566078 NUDT18Q6ZVK8 323 aa30.79■■■□□ 2.52
CTCF-203ENST00000566078 TMEM135Q86UB9 458 aa30.79■■■□□ 2.52
CTCF-203ENST00000566078 PAF1Q8N7H5 531 aa30.79■■■□□ 2.52
CTCF-203ENST00000566078 KDM1BQ8NB78 822 aa30.79■■■□□ 2.52
CTCF-203ENST00000566078 BLOC1S5Q8TDH9 187 aa30.79■■■□□ 2.52
CTCF-203ENST00000566078 PTCD2Q8WV60 388 aaKnown RBP30.79■■■□□ 2.52
CTCF-203ENST00000566078 FCRL3Q96P31 734 aaPredicted RBP30.79■■■□□ 2.52
CTCF-203ENST00000566078 RANBP9Q96S59 729 aa30.79■■■□□ 2.52
CTCF-203ENST00000566078 MTG2Q9H4K7 406 aa30.79■■■□□ 2.52
CTCF-203ENST00000566078 TRPV5Q9NQA5 729 aa30.79■■■□□ 2.52
CTCF-203ENST00000566078 SCN8AQ9UQD0 1980 aa30.79■■■□□ 2.52
CTCF-203ENST00000566078 ATG2BQ96BY7 2078 aa30.78■■■□□ 2.52
CTCF-203ENST00000566078 HEATR9A2RTY3 570 aa30.78■■■□□ 2.52
CTCF-203ENST00000566078 SPECC1L-ADORA2AF8WAN1 911 aa30.78■■■□□ 2.52
CTCF-203ENST00000566078 TRAFD1O14545 582 aaPredicted RBP30.78■■■□□ 2.52
CTCF-203ENST00000566078 HTRA2O43464 458 aaPredicted RBP30.78■■■□□ 2.52
CTCF-203ENST00000566078 OPA1O60313 960 aa30.78■■■□□ 2.52
CTCF-203ENST00000566078 PIRTP0C851 137 aa30.78■■■□□ 2.52
CTCF-203ENST00000566078 GALK1P51570 392 aa30.78■■■□□ 2.52
CTCF-203ENST00000566078 KLHL38Q2WGJ6 581 aa30.78■■■□□ 2.52
CTCF-203ENST00000566078 ANKRD20A4Q4UJ75 823 aa30.78■■■□□ 2.52
CTCF-203ENST00000566078 TRMT10BQ6PF06 316 aaKnown RBP30.78■■■□□ 2.52
CTCF-203ENST00000566078 GOLGA6L1Q8N7Z2 621 aa30.78■■■□□ 2.52
CTCF-203ENST00000566078 DNASE1L2Q92874 299 aa30.78■■■□□ 2.52
CTCF-203ENST00000566078 VOPP1Q96AW1 172 aa30.78■■■□□ 2.52
CTCF-203ENST00000566078 MFSD3Q96ES6 412 aa30.78■■■□□ 2.52
CTCF-203ENST00000566078 SH3GL2Q99962 352 aa30.78■■■□□ 2.52
CTCF-203ENST00000566078 TMEM109Q9BVC6 243 aa30.78■■■□□ 2.52
CTCF-203ENST00000566078 CPEB1Q9BZB8 566 aaKnown RBP30.78■■■□□ 2.52
CTCF-203ENST00000566078 FBRSL1Q9HCM7 1045 aaKnown RBP30.78■■■□□ 2.52
CTCF-203ENST00000566078 PRKAG3Q9UGI9 489 aa30.78■■■□□ 2.52
CTCF-203ENST00000566078 GOLGA6L10A6NI86 522 aa30.77■■■□□ 2.52
CTCF-203ENST00000566078 WASH3PC4AMC7 463 aa30.77■■■□□ 2.52
CTCF-203ENST00000566078 IL9P15248 144 aa30.77■■■□□ 2.52
CTCF-203ENST00000566078 NMBRP28336 390 aa30.77■■■□□ 2.52
CTCF-203ENST00000566078 CTHP32929 405 aa30.77■■■□□ 2.52
CTCF-203ENST00000566078 SLCO1A2P46721 670 aa30.77■■■□□ 2.52
CTCF-203ENST00000566078 EPHB1P54762 984 aa30.77■■■□□ 2.52
CTCF-203ENST00000566078 GRM3Q14832 879 aa30.77■■■□□ 2.52
CTCF-203ENST00000566078 SERBP1Q8NC51 408 aaKnown RBP eCLIP30.77■■■□□ 2.52
CTCF-203ENST00000566078 GRIN3AQ8TCU5 1115 aa30.77■■■□□ 2.52
CTCF-203ENST00000566078 ZNF778Q96MU6 729 aa30.77■■■□□ 2.52
CTCF-203ENST00000566078 CYTH2Q99418 400 aa30.77■■■□□ 2.52
CTCF-203ENST00000566078 FAM50BQ9Y247 325 aa30.77■■■□□ 2.52
CTCF-203ENST00000566078 CKAP5Q14008 2032 aa30.77■■■□□ 2.52
CTCF-203ENST00000566078 TLDC2A0PJX2 215 aa30.76■■■□□ 2.52
CTCF-203ENST00000566078 ANKRD66B4E2M5 251 aa30.76■■■□□ 2.52
CTCF-203ENST00000566078 RASGRF2O14827 1237 aa30.76■■■□□ 2.52
CTCF-203ENST00000566078 TFF2Q03403 129 aa30.76■■■□□ 2.52
CTCF-203ENST00000566078 QPCTQ16769 361 aa30.76■■■□□ 2.52
CTCF-203ENST00000566078 ARMC3Q5W041 872 aa30.76■■■□□ 2.52
CTCF-203ENST00000566078 SUGP1Q8IWZ8 645 aaKnown RBP30.76■■■□□ 2.52
CTCF-203ENST00000566078 PTPRN2Q92932 1015 aa30.76■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms