RNA–Protein interactions for RNA: ENST00000561395.5

TPM1-231, Transcript of tropomyosin 1, human

TSL 5

Gene TPM1, Length 673 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-231	ENST00000561395	NSMCE1	Q8WV22	266 aa		7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	STAMBPL1	Q96FJ0	436 aa		7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	IMP4	Q96G21	291 aa	Known RBP	7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	XPO6	Q96QU8	1125 aa	Known RBP	7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	CYTH2	Q99418	400 aa		7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	NELL2	Q99435	816 aa		7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	TBL1Y	Q9BQ87	522 aa		7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	NAT9	Q9BTE0	207 aa		7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	DHRS4	Q9BTZ2	278 aa		7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	PRKD2	Q9BZL6	878 aa		7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	TASP1	Q9H6P5	420 aa		7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	SYBU	Q9NX95	663 aa		7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	UBP1	Q9NZI7	540 aa		7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	CTNNAL1	Q9UBT7	734 aa		7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	SLC24A2	Q9UI40	661 aa		7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	ADAM21	Q9UKJ8	722 aa		7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	SH3BP1	Q9Y3L3	701 aa		7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	MAD1L1	Q9Y6D9	718 aa		7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	LOC400499	M0QZD8	3231 aa		7.62	□□□□□ -1.19
TPM1-231	ENST00000561395	ATG2B	Q96BY7	2078 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	IGSF10	Q6WRI0	2623 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	E2F8	A0AVK6	867 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	POC1B-GALNT4	F8VUJ3	575 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	AP3B1	O00203	1094 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	KDELR3	O43731	214 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	USP12	O75317	370 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	LUC7L3	O95232	432 aa	Known RBP	7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	MT-CYB	P00156	380 aa	Predicted RBP	7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	C1QA	P02745	245 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	MMP2	P08253	660 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	CEBPB	P17676	345 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	PGAM1	P18669	254 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	PRKCH	P24723	683 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	HPD	P32754	393 aa	Predicted RBP	7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	ADRA1A	P35348	466 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	AVPR1A	P37288	418 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	ETFB	P38117	255 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	LIMK1	P53667	647 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	GEMIN4	P57678	1058 aa	Known RBP	7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	PPP2R2A	P63151	447 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	NTHL1	P78549	312 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	CRADD	P78560	199 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	NIPAL4	Q0D2K0	466 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	SLC10A7	Q0GE19	358 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	CDH17	Q12864	832 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	USP4	Q13107	963 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	MPP3	Q13368	585 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	ZNF235	Q14590	738 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	RFTN1	Q14699	578 aa	Predicted RBP	7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	CRYM	Q14894	314 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	TMED2	Q15363	201 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	SKIDA1	Q1XH10	827 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	AASDH	Q4L235	1098 aa	Predicted RBP	7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	RNF219	Q5W0B1	726 aa	Predicted RBP	7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	ALG1L	Q6GMV1	187 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	NAPEPLD	Q6IQ20	393 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	CASC4	Q6P4E1	433 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	KDELC1	Q6UW63	502 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	GRASP	Q7Z6J2	395 aa	Predicted RBP	7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	LINC00523	Q86TU6	105 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	PRPF39	Q86UA1	669 aa	Known RBP	7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	CCNJL	Q8IV13	435 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	BBS7	Q8IWZ6	715 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	PGBD5	Q8N414	524 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	ARFGAP2	Q8N6H7	521 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	DNAAF3	Q8N9W5	541 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	IPMK	Q8NFU5	416 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	RIN3	Q8TB24	985 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	SH3RF2	Q8TEC5	729 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	USP13	Q92995	863 aa	Predicted RBP	7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	TADA1	Q96BN2	335 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	TMA16	Q96EY4	203 aa	Known RBP	7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	PAFAH2	Q99487	392 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	FICD	Q9BVA6	458 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	ACE2	Q9BYF1	805 aa	Predicted RBP	7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	SMG9	Q9H0W8	520 aa	Known RBP	7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	VPS45	Q9NRW7	570 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	HAUS2	Q9NVX0	235 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	PIH1D1	Q9NWS0	290 aa	Known RBP	7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	BFAR	Q9NZS9	450 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	SAMD15	Q9P1V8	674 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	ZMYM5	Q9UJ78	669 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	CCL26	Q9Y258	94 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	BPTF	Q12830	3046 aa		7.61	□□□□□ -1.19
TPM1-231	ENST00000561395	MAST4	O15021	2626 aa		7.6	□□□□□ -1.19
TPM1-231	ENST00000561395	HELZ2	Q9BYK8	2649 aa	Known RBP	7.6	□□□□□ -1.19
TPM1-231	ENST00000561395	FAM159B	A6NKW6	160 aa		7.6	□□□□□ -1.19
TPM1-231	ENST00000561395	SRRM3	A6NNA2	597 aa	Predicted RBP	7.6	□□□□□ -1.19
TPM1-231	ENST00000561395		H0Y626	953 aa		7.6	□□□□□ -1.19
TPM1-231	ENST00000561395	ZNF197	O14709	1029 aa		7.6	□□□□□ -1.19
TPM1-231	ENST00000561395	TM4SF5	O14894	197 aa		7.6	□□□□□ -1.19
TPM1-231	ENST00000561395	MUSK	O15146	869 aa		7.6	□□□□□ -1.19
TPM1-231	ENST00000561395	SHOX2	O60902	331 aa	Predicted RBP	7.6	□□□□□ -1.19
TPM1-231	ENST00000561395	ZMPSTE24	O75844	475 aa		7.6	□□□□□ -1.19
TPM1-231	ENST00000561395	ALDH1A2	O94788	518 aa		7.6	□□□□□ -1.19
TPM1-231	ENST00000561395	PRAMEF12	O95522	483 aa		7.6	□□□□□ -1.19
TPM1-231	ENST00000561395	HOXB1	P14653	301 aa	Predicted RBP	7.6	□□□□□ -1.19
TPM1-231	ENST00000561395	TCF3	P15923	654 aa		7.6	□□□□□ -1.19

Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms