RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 AAR2Q9Y312 384 aaKnown RBP10.17□□□□□ -0.78
USP3-216ENST00000559873 ARIH1Q9Y4X5 557 aaPredicted RBP10.17□□□□□ -0.78
USP3-216ENST00000559873 RAI2Q9Y5P3 530 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 MEI4A8MW99 385 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 ZNF185O15231 689 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 HTRA2O43464 458 aaPredicted RBP10.16□□□□□ -0.78
USP3-216ENST00000559873 TSPAN6O43657 245 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 AP1G1O43747 822 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 GCATO75600 419 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 PGLSO95336 258 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 CYP2A6P11509 494 aaPredicted RBP10.16□□□□□ -0.78
USP3-216ENST00000559873 NUDT1P36639 197 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 GRIA4P48058 902 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 ADPRHP54922 357 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 GEMP55040 296 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 TCF15Q12870 199 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 TRAF2Q12933 501 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 SIX1Q15475 284 aaPredicted RBP10.16□□□□□ -0.78
USP3-216ENST00000559873 CYP1B1Q16678 543 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 UGP2Q16851 508 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 WDR45BQ5MNZ6 344 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 PIP5KL1Q5T9C9 394 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 KIAA1161Q6NSJ0 714 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 NEK5Q6P3R8 708 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 CCDC137Q6PK04 289 aaKnown RBP10.16□□□□□ -0.78
USP3-216ENST00000559873 PRR23BQ6ZRT6 265 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 USP45Q70EL2 814 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 B4GALNT4Q76KP1 1039 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 TTC7BQ86TV6 843 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 CREG2Q8IUH2 290 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 PRELID2Q8N945 189 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 CADM4Q8NFZ8 388 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 OR14C36Q8NHC7 312 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 ATL2Q8NHH9 583 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 ARRDC2Q8TBH0 407 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 CCHCR1Q8TD31 782 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 RLN3Q8WXF3 142 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 ZNF592Q92610 1267 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 SRPK1Q96SB4 655 aaKnown RBP10.16□□□□□ -0.78
USP3-216ENST00000559873 AP1M1Q9BXS5 423 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 USP29Q9HBJ7 922 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 WSB2Q9NYS7 404 aaPredicted RBP10.16□□□□□ -0.78
USP3-216ENST00000559873 PAK5Q9P286 719 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 SERGEFQ9UGK8 458 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 PHTF1Q9UMS5 762 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 PCDHB9Q9Y5E1 797 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 PCDHGC4Q9Y5F7 938 aa10.16□□□□□ -0.78
USP3-216ENST00000559873 PLXND1Q9Y4D7 1925 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 TBC1D3DA0A087WVF3 549 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 TBC1D3IA0A087WXS9 549 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 TBC1D3EA0A087X179 549 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 TBC1D3KA0A087X1G2 549 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 TBC1D3FA6NER0 549 aaPredicted RBP10.15□□□□□ -0.78
USP3-216ENST00000559873 ERI2A8K979 691 aaKnown RBP10.15□□□□□ -0.78
USP3-216ENST00000559873 TBC1D3LB9A6J9 549 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 E7EVH7 732 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 TRAFD1O14545 582 aaPredicted RBP10.15□□□□□ -0.78
USP3-216ENST00000559873 PSMD3O43242 534 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 ECEL1O95672 775 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 TBC1D3HP0C7X1 549 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 PSMB4P28070 264 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 FDFT1P37268 417 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 COILP38432 576 aaPredicted RBP10.15□□□□□ -0.78
USP3-216ENST00000559873 LMAN1P49257 510 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 GDF10P55107 478 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 SKOR1P84550 965 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 CDK18Q07002 472 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 NIPAL4Q0D2K0 466 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 TUBB2AQ13885 445 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 PARP6Q2NL67 630 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 SETMARQ53H47 684 aaPredicted RBP10.15□□□□□ -0.78
USP3-216ENST00000559873 SYCP2LQ5T4T6 812 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 PMS2CLQ68D20 193 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 TBC1D3GQ6DHY5 549 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 TBC1D3CQ6IPX1 549 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 TBC1D3Q8IZP1 549 aaPredicted RBP10.15□□□□□ -0.78
USP3-216ENST00000559873 LPCAT1Q8NF37 534 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 IPMKQ8NFU5 416 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 CCDC110Q8TBZ0 833 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 CXorf40AQ8TE69 158 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 RMDN1Q96DB5 314 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 FEM1CQ96JP0 617 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 RBM15Q96T37 977 aaKnown RBP eCLIP10.15□□□□□ -0.78
USP3-216ENST00000559873 TUBB2BQ9BVA1 445 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 GPR174Q9BXC1 333 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 C1QTNF7Q9BXJ2 289 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 NEUROG2Q9H2A3 272 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 EPC1Q9H2F5 836 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 C10orf88Q9H8K7 445 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 PCDH9Q9HC56 1237 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 CD93Q9NPY3 652 aa10.15□□□□□ -0.78
USP3-216ENST00000559873 TTC24A2A3L6 582 aaPredicted RBP10.14□□□□□ -0.79
USP3-216ENST00000559873 FAM47DPA6NHR8 397 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 FANCGO15287 622 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 PMPCBO75439 489 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 GJB3O75712 270 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 URI1O94763 535 aaPredicted RBP10.14□□□□□ -0.79
USP3-216ENST00000559873 PCDH8O95206 1070 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 NDST3O95803 873 aa10.14□□□□□ -0.79
USP3-216ENST00000559873 EPOP01588 193 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms