RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 FBXL12Q9NXK8 326 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 FZD4Q9ULV1 537 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 TPX2Q9ULW0 747 aaKnown RBP9.32□□□□□ -0.92
LDLR-210ENST00000559340 RAI2Q9Y5P3 530 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 LRRK1Q38SD2 2015 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 TRIOO75962 3097 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 SDK1Q7Z5N4 2213 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.31□□□□□ -0.92
LDLR-210ENST00000559340 ANTXRLA6NF34 631 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 C16orf96A6NNT2 1141 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 SMAPO00193 183 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 MUSKO15146 869 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 MID1O15344 667 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 HTRA2O43464 458 aaPredicted RBP9.31□□□□□ -0.92
LDLR-210ENST00000559340 NDUFS2O75306 463 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 PMPCBO75439 489 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 PGLSO95336 258 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 NDST3O95803 873 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 CPP00450 1065 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 NDUFV2P19404 249 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 HLA-DPA1P20036 260 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 PSMB4P28070 264 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 CD68P34810 354 aaPredicted RBP9.31□□□□□ -0.92
LDLR-210ENST00000559340 CNR2P34972 360 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 RPL22P35268 128 aaKnown RBP9.31□□□□□ -0.92
LDLR-210ENST00000559340 ADCY8P40145 1251 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 RGRP47804 291 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 GDF10P55107 478 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 SKOR1P84550 965 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 CSTF1Q05048 431 aaKnown RBP9.31□□□□□ -0.92
LDLR-210ENST00000559340 CDK18Q07002 472 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 GPS1Q13098 491 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 GLE1Q53GS7 698 aaKnown RBP9.31□□□□□ -0.92
LDLR-210ENST00000559340 TTC27Q6P3X3 843 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.31□□□□□ -0.92
LDLR-210ENST00000559340 TTC7BQ86TV6 843 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 WDR5BQ86VZ2 330 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 LONP2Q86WA8 852 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 CAMK1DQ8IU85 385 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.31□□□□□ -0.92
LDLR-210ENST00000559340 OR6K2Q8NGY2 324 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 PDCD6IPQ8WUM4 868 aaKnown RBP9.31□□□□□ -0.92
LDLR-210ENST00000559340 SPOCK2Q92563 424 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 RMDN1Q96DB5 314 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 MKRN2Q9H000 416 aaKnown RBP9.31□□□□□ -0.92
LDLR-210ENST00000559340 BTBD1Q9H0C5 482 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 RAB17Q9H0T7 212 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 LRRC40Q9H9A6 602 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 ETNK1Q9HBU6 452 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 CD248Q9HCU0 757 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 RAB6BQ9NRW1 208 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 ASIC3Q9UHC3 531 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 UTP11Q9Y3A2 253 aaKnown RBP9.31□□□□□ -0.92
LDLR-210ENST00000559340 PCDHB9Q9Y5E1 797 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 PCDHGC4Q9Y5F7 938 aa9.31□□□□□ -0.92
LDLR-210ENST00000559340 A0A1W2PP55 124 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 TSPAN11A1L157 253 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 LRRC72A6NJI9 287 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 UPK3BL1B0FP48 263 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 UPK3BL2E5RIL1 263 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 K7ESF4 209 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 NEMP1O14524 444 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 MAP3K13O43283 966 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 GALR2O43603 387 aaPredicted RBP9.3□□□□□ -0.92
LDLR-210ENST00000559340 TSPAN6O43657 245 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 AP1G1O43747 822 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 GFRA3O60609 400 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 RNASEH2AO75792 299 aaKnown RBP9.3□□□□□ -0.92
LDLR-210ENST00000559340 PIGNO95427 931 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 IGLV3-19P01714 112 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 FGF1P05230 155 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 CTSLP07711 333 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 MMP2P08253 660 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 ETS1P14921 441 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 TIMP2P16035 220 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 GKP32189 559 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 NUDT1P36639 197 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 TPMTP51580 245 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 WNT3AP56704 352 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 BASP1P80723 227 aaKnown RBP9.3□□□□□ -0.92
LDLR-210ENST00000559340 C2orf54Q08AI8 447 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 TRAF2Q12933 501 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 SEMA5AQ13591 1074 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 LAMB3Q13751 1172 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 PTK6Q13882 451 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 UGP2Q16851 508 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 C8orf74Q6P047 294 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 NEK5Q6P3R8 708 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 PPP1R21Q6ZMI0 780 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 USP45Q70EL2 814 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 PRPF39Q86UA1 669 aaKnown RBP9.3□□□□□ -0.92
LDLR-210ENST00000559340 JAMLQ86YT9 394 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 MMGT1Q8N4V1 131 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 MDGA1Q8NFP4 955 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 IPMKQ8NFU5 416 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 ATOH1Q92858 354 aaPredicted RBP9.3□□□□□ -0.92
LDLR-210ENST00000559340 TADA1Q96BN2 335 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 ECHDC3Q96DC8 303 aa9.3□□□□□ -0.92
LDLR-210ENST00000559340 MLPHQ9BV36 600 aaPredicted RBP9.3□□□□□ -0.92
LDLR-210ENST00000559340 TDRD1Q9BXT4 1180 aaKnown RBP9.3□□□□□ -0.92
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