RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 PAF1Q8N7H5 531 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 PDCD7Q8N8D1 485 aaKnown RBP12.57□□□□□ -0.4
SHMT2-221ENST00000555773 MCUQ8NE86 351 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 IPMKQ8NFU5 416 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 GRIN3AQ8TCU5 1115 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 SEC14L1Q92503 715 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 CPT1BQ92523 772 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 SNF8Q96H20 258 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 MRGPRX2Q96LB1 330 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 MRGPRX1Q96LB2 322 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 TRIB3Q96RU7 358 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 SRPK1Q96SB4 655 aaKnown RBP12.57□□□□□ -0.4
SHMT2-221ENST00000555773 TRIM51Q9BSJ1 452 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 FSD1LQ9BXM9 530 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 HDAC8Q9BY41 377 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 FRMD8Q9BZ67 464 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-221ENST00000555773 EPHX3Q9H6B9 360 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 ARNT2Q9HBZ2 717 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 WHRNQ9P202 907 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 SARDHQ9UL12 918 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 PHTF1Q9UMS5 762 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 CHKBQ9Y259 395 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 SNX24Q9Y343 169 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 PPIL1Q9Y3C6 166 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 PCDHB9Q9Y5E1 797 aa12.57□□□□□ -0.4
SHMT2-221ENST00000555773 ANKRD66B4E2M5 251 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 F5H423 210 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-221ENST00000555773 RIOK3O14730 519 aaKnown RBP12.56□□□□□ -0.4
SHMT2-221ENST00000555773 SEC31AO94979 1220 aaKnown RBP12.56□□□□□ -0.4
SHMT2-221ENST00000555773 HEXIM1O94992 359 aaKnown RBP12.56□□□□□ -0.4
SHMT2-221ENST00000555773 ACADMP11310 421 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 TIMP2P16035 220 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 GABRG2P18507 467 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 HLA-DPA1P20036 260 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 PSMD8P48556 350 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 EPHB1P54762 984 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 MRPS25P82663 173 aaKnown RBP12.56□□□□□ -0.4
SHMT2-221ENST00000555773 SLC7A5Q01650 507 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 CAV1Q03135 178 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 CALCOCO2Q13137 446 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 KCNJ11Q14654 390 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 MORF4L2Q15014 288 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 PCSK7Q16549 785 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 UGP2Q16851 508 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 TTC31Q49AM3 519 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-221ENST00000555773 RNASEH2BQ5TBB1 312 aaKnown RBP12.56□□□□□ -0.4
SHMT2-221ENST00000555773 IZUMO3Q5VZ72 239 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 FBXL19Q6PCT2 694 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 USP30Q70CQ3 517 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 ERN2Q76MJ5 926 aaKnown RBP12.56□□□□□ -0.4
SHMT2-221ENST00000555773 TTC7BQ86TV6 843 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 KBTBD6Q86V97 674 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 RASSF3Q86WH2 238 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 TAB3Q8N5C8 712 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-221ENST00000555773 NAT8LQ8N9F0 302 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 PDCD6IPQ8WUM4 868 aaKnown RBP12.56□□□□□ -0.4
SHMT2-221ENST00000555773 PIH1D2Q8WWB5 315 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 RAB7BQ96AH8 199 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 TBL1YQ9BQ87 522 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 COL25A1Q9BXS0 654 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-221ENST00000555773 FAM129AQ9BZQ8 928 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 TRIM31Q9BZY9 425 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 PABPC3Q9H361 631 aaKnown RBP12.56□□□□□ -0.4
SHMT2-221ENST00000555773 ITM2CQ9NQX7 267 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 FAM114A2Q9NRY5 505 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 POLR3BQ9NW08 1133 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-221ENST00000555773 SPATA6Q9NWH7 488 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-221ENST00000555773 EBF1Q9UH73 591 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 ANAPC5Q9UJX4 755 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 NCKAP1Q9Y2A7 1128 aa12.56□□□□□ -0.4
SHMT2-221ENST00000555773 CCDC163A0A0D9SF12 145 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 BHMG1C9JSJ3 638 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-221ENST00000555773 MID1O15344 667 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 SLC7A4O43246 635 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 ZNF217O75362 1048 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 CPP00450 1065 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 AGTP01019 485 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 FGF1P05230 155 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 PDHA1P08559 390 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 MLNP12872 115 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 NDUFV2P19404 249 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 XPAP23025 273 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-221ENST00000555773 RPL21P46778 160 aaKnown RBP12.55□□□□□ -0.4
SHMT2-221ENST00000555773 GRIA4P48058 902 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 NEK3P51956 506 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 GUCY2DQ02846 1103 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 SPARCL1Q14515 664 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 SLC1A5Q15758 541 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 HIBCHQ6NVY1 386 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-221ENST00000555773 PPP1R21Q6ZMI0 780 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 KDELC2Q7Z4H8 507 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 IFT20Q8IY31 132 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 PGBD3Q8N328 593 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 LRRN4CLQ8ND94 238 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 HMGB4Q8WW32 186 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 UBXN4Q92575 508 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 FAM131CQ96AQ9 280 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 ARRDC3Q96B67 414 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 RMDN1Q96DB5 314 aa12.55□□□□□ -0.4
SHMT2-221ENST00000555773 SCRN2Q96FV2 425 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms