RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 POM121L1PQ3SYA9 428 aa15.78■□□□□ 0.12
CUX1-211ENST00000546411 SLC9A4Q6AI14 798 aa15.78■□□□□ 0.12
CUX1-211ENST00000546411 OR7D4Q8NG98 312 aa15.78■□□□□ 0.12
CUX1-211ENST00000546411 YME1L1Q96TA2 773 aa15.78■□□□□ 0.12
CUX1-211ENST00000546411 ZMYND8Q9ULU4 1186 aaPredicted RBP15.78■□□□□ 0.12
CUX1-211ENST00000546411 TIMM22Q9Y584 194 aa15.78■□□□□ 0.12
CUX1-211ENST00000546411 CFAP99D6REC4 459 aa15.78■□□□□ 0.12
CUX1-211ENST00000546411 FRG1Q14331 258 aaKnown RBP15.78■□□□□ 0.12
CUX1-211ENST00000546411 BRMS1LQ5PSV4 323 aa15.78■□□□□ 0.12
CUX1-211ENST00000546411 CNSTQ6PJW8 725 aa15.78■□□□□ 0.12
CUX1-211ENST00000546411 TMEM40Q8WWA1 233 aa15.78■□□□□ 0.12
CUX1-211ENST00000546411 PRR11Q96HE9 360 aaPredicted RBP15.78■□□□□ 0.12
CUX1-211ENST00000546411 KCTD14Q9BQ13 255 aaPredicted RBP15.78■□□□□ 0.12
CUX1-211ENST00000546411 PRDM16Q9HAZ2 1276 aa15.78■□□□□ 0.12
CUX1-211ENST00000546411 PCDHGC4Q9Y5F7 938 aa15.78■□□□□ 0.12
CUX1-211ENST00000546411 SRCAPQ6ZRS2 3230 aa15.78■□□□□ 0.12
CUX1-211ENST00000546411 DUSP11O75319 330 aaKnown RBP15.78■□□□□ 0.12
CUX1-211ENST00000546411 WARSP23381 471 aaKnown RBP15.78■□□□□ 0.12
CUX1-211ENST00000546411 IL2P60568 153 aa15.78■□□□□ 0.12
CUX1-211ENST00000546411 CHRNB3Q05901 458 aa15.78■□□□□ 0.12
CUX1-211ENST00000546411 LSM12Q3MHD2 195 aaKnown RBP15.78■□□□□ 0.12
CUX1-211ENST00000546411 RNF220Q5VTB9 566 aa15.78■□□□□ 0.12
CUX1-211ENST00000546411 MARK2Q7KZI7 788 aaKnown RBP15.78■□□□□ 0.12
CUX1-211ENST00000546411 OR4K2Q8NGD2 314 aa15.78■□□□□ 0.12
CUX1-211ENST00000546411 EIF3LQ9Y262 564 aaKnown RBP15.78■□□□□ 0.12
CUX1-211ENST00000546411 ZNF711Q9Y462 761 aa15.78■□□□□ 0.12
CUX1-211ENST00000546411 SNRPB2P08579 225 aaKnown RBP15.77■□□□□ 0.12
CUX1-211ENST00000546411 CYP3A5P20815 502 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 HALP42357 657 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 SLC7A2P52569 658 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 IRX1P78414 480 aaPredicted RBP15.77■□□□□ 0.12
CUX1-211ENST00000546411 HSPA14Q0VDF9 509 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 RETSATQ6NUM9 610 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 RPS27LQ71UM5 84 aaKnown RBP15.77■□□□□ 0.12
CUX1-211ENST00000546411 EFL1Q7Z2Z2 1120 aaKnown RBP15.77■□□□□ 0.12
CUX1-211ENST00000546411 CUZD1Q86UP6 607 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 SLC44A2Q8IWA5 706 aaPredicted RBP15.77■□□□□ 0.12
CUX1-211ENST00000546411 STAG3L4Q8TBR4 150 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 HMCESQ96FZ2 354 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 SMOQ99835 787 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 PAAF1Q9BRP4 392 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 SLC7A8Q9UHI5 535 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 ZNHIT2Q9UHR6 403 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 IGKV6-21A0A0C4DH24 114 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 CD3EAPO15446 510 aaKnown RBP15.77■□□□□ 0.12
CUX1-211ENST00000546411 PIK3CGP48736 1102 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 PRKAA2P54646 552 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 ST8SIA6P61647 398 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 TRAF2Q12933 501 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 BTG3Q14201 252 aaPredicted RBP15.77■□□□□ 0.12
CUX1-211ENST00000546411 EMC10Q5UCC4 262 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 CCDC81Q6ZN84 652 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 RSPH1Q8WYR4 309 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 DCUN1D5Q9BTE7 237 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 ZFP14Q9HCL3 533 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 HMX1Q9NP08 348 aaPredicted RBP15.77■□□□□ 0.12
CUX1-211ENST00000546411 SPASTQ9UBP0 616 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 CDH22Q9UJ99 828 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 CNTN6Q9UQ52 1028 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 TRAF6Q9Y4K3 522 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 AP4S1Q9Y587 144 aa15.77■□□□□ 0.12
CUX1-211ENST00000546411 SMCHD1A6NHR9 2005 aa15.77■□□□□ 0.11
CUX1-211ENST00000546411 KCNU1A8MYU2 1149 aa15.77■□□□□ 0.11
CUX1-211ENST00000546411 EVPLLA8MZ36 301 aa15.77■□□□□ 0.11
CUX1-211ENST00000546411 ZNF682O95780 498 aa15.77■□□□□ 0.11
CUX1-211ENST00000546411 FAM58BPP0C7Q3 252 aa15.77■□□□□ 0.11
CUX1-211ENST00000546411 MZF1P28698 734 aaPredicted RBP15.77■□□□□ 0.11
CUX1-211ENST00000546411 SLC9B1Q4ZJI4 515 aa15.77■□□□□ 0.11
CUX1-211ENST00000546411 HECTD3Q5T447 861 aa15.77■□□□□ 0.11
CUX1-211ENST00000546411 ZBTB46Q86UZ6 589 aa15.77■□□□□ 0.11
CUX1-211ENST00000546411 ACBD6Q9BR61 282 aa15.77■□□□□ 0.11
CUX1-211ENST00000546411 CRTAC1Q9NQ79 661 aa15.77■□□□□ 0.11
CUX1-211ENST00000546411 DYRK4Q9NR20 520 aa15.77■□□□□ 0.11
CUX1-211ENST00000546411 SLC2A6Q9UGQ3 507 aa15.77■□□□□ 0.11
CUX1-211ENST00000546411 TMEM233B4DJY2 109 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 PRKCGP05129 697 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 CCR10P46092 362 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 SMAD3P84022 425 aaKnown RBP15.76■□□□□ 0.11
CUX1-211ENST00000546411 DSELQ8IZU8 1212 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 HEXDCQ8WVB3 486 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 ANKRD27Q96NW4 1050 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 ELOVL6Q9H5J4 265 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 C10orf71Q711Q0 1435 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 SF3B1O75533 1304 aaKnown RBP eCLIP15.76■□□□□ 0.114e-6■■■■■ 58.5
CUX1-211ENST00000546411 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.76■□□□□ 0.11
CUX1-211ENST00000546411 CCDC154A6NI56 674 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 FAM159BA6NKW6 160 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 FASP25445 335 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 EPHB3P54753 998 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 ZBTB17Q13105 803 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 KRT72Q14CN4 511 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 INSCQ1MX18 579 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 SAMD4BQ5PRF9 694 aaKnown RBP15.76■□□□□ 0.11
CUX1-211ENST00000546411 HECTD2Q5U5R9 776 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 CACHD1Q5VU97 1274 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 ASB8Q9H765 288 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 PARVBQ9HBI1 364 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 KLQ9UEF7 1012 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 FETUBQ9UGM5 382 aa15.76■□□□□ 0.11
CUX1-211ENST00000546411 TNRC6CQ9HCJ0 1690 aaKnown RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms