RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CLDN25C9JDP6 229 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 C5orf67F2Z3F1 127 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 SLCO1B7G3V0H7 640 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 GOLGA8RI6L899 631 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 TRIM38O00635 465 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 RFPL1O75677 317 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 FAM13AO94988 1023 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 WEE2P0C1S8 567 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 CCNA2P20248 432 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 ENDOUP21128 410 aaKnown RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 SLC7A1P30825 629 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 NUDT1P36639 197 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 IDH3AP50213 366 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 NME5P56597 212 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 MRPS5P82675 430 aaKnown RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 GTF2BQ00403 316 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 NFATC3Q12968 1075 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 ATP1A4Q13733 1029 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 ANKRD39Q53RE8 183 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 BOLA3Q53S33 107 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 TMEM240Q5SV17 173 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 CYP4A22Q5TCH4 519 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 SIGIRRQ6IA17 410 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 TUBA3EQ6PEY2 450 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 IYDQ6PHW0 289 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 HACD2Q6Y1H2 254 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 SLC25A41Q8N5S1 370 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 FBXO36Q8NEA4 188 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 OR13F1Q8NGS4 319 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 SLC7A3Q8WY07 619 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 TSGA13Q96PP4 275 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 RUSC1Q9BVN2 902 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 OR2B2Q9GZK3 357 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 EHD1Q9H4M9 534 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 CXorf21Q9HAI6 301 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 FBXO8Q9NRD0 319 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 C1orf112Q9NSG2 853 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 ANGPTL3Q9Y5C1 460 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 DGKBQ9Y6T7 804 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 MTCL1Q9Y4B5 1905 aaKnown RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 COL4A2P08572 1712 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 OBSL1O75147 1896 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 hCG_1818297A0A087WSY0 165 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 TCRBV3S1A0A5B6 114 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 ILVBLA1L0T0 632 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 WDR91A4D1P6 747 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 SEC14L2O76054 403 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 APOEP02649 317 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 KRT20P35900 424 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 CSE1LP55060 971 aaKnown RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 RHDQ02161 417 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 CACNB1Q02641 598 aaPredicted RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 MLLT1Q03111 559 aaPredicted RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 PPP3CAQ08209 521 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 KLF10Q13118 480 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 LAPTM5Q13571 262 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 KRR1Q13601 381 aaKnown RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 FAM47CQ5HY64 1035 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 ZNF618Q5T7W0 954 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 EPGNQ6UW88 154 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 SPOCD1Q6ZMY3 1216 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 HPS6Q86YV9 775 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 ARHGEF19Q8IW93 802 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 SLC44A2Q8IWA5 706 aaPredicted RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 GPR65Q8IYL9 337 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 THNSL1Q8IYQ7 743 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 LILRA2Q8N149 483 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 SIX6OS1Q8N1H7 587 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 MCUQ8NE86 351 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 ISL2Q96A47 359 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 RTP4Q96DX8 246 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 PWWP2AQ96N64 755 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 DEPDC7Q96QD5 511 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 SNX18Q96RF0 628 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 WDR83Q9BRX9 315 aaKnown RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 NDEL1Q9GZM8 345 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 HOXD1Q9GZZ0 328 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 AKIP1Q9NQ31 210 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 MID2Q9UJV3 735 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 DNPEPQ9ULA0 475 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 PLXNA3P51805 1871 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 TCRBV9S1A1TA0A576 114 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 LRRC72A6NJI9 287 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 VSTM5A8MXK1 200 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 MSI1O43347 362 aaKnown RBP5.3□□□□□ -1.56
USP28-213ENST00000544967 ATE1O95260 518 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 RAD52P43351 418 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 HLCSP50747 726 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 PEX3P56589 373 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 MPP1Q00013 466 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 FPGSQ05932 587 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 CAPSQ13938 189 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 PDE1CQ14123 709 aaPredicted RBP5.3□□□□□ -1.56
USP28-213ENST00000544967 UBAP2LQ14157 1087 aaKnown RBP5.3□□□□□ -1.56
USP28-213ENST00000544967 ARHGAP44Q17R89 818 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 LRRC36Q1X8D7 754 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 TFDP3Q5H9I0 405 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 RALGPS1Q5JS13 557 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 FAM209AQ5JX71 171 aa5.3□□□□□ -1.56
USP28-213ENST00000544967 UBXN11Q5T124 520 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms