RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 CD53P19397 219 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 NDUFS1P28331 727 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 PPFIA1Q13136 1202 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 SEMA3BQ13214 749 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 ERV3-1Q14264 604 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 CCL14Q16627 93 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 PRTGQ2VWP7 1150 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 GLE1Q53GS7 698 aaKnown RBP4.25□□□□□ -1.73
CD44-235ENST00000532339 ARHGAP15Q53QZ3 475 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 TMEM196Q5HYL7 178 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 TANGO2Q6ICL3 276 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 JMJD6Q6NYC1 403 aaPredicted RBP4.25□□□□□ -1.73
CD44-235ENST00000532339 ADGRF4Q8IZF3 695 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 CLASRPQ8N2M8 674 aaKnown RBP4.25□□□□□ -1.73
CD44-235ENST00000532339 TMEM105Q8N8V8 129 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 IL17REQ8NFR9 667 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 OR52L2PQ8NGH6 319 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 TDRD7Q8NHU6 1098 aaKnown RBP4.25□□□□□ -1.73
CD44-235ENST00000532339 STT3BQ8TCJ2 826 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 GBF1Q92538 1859 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 USP6NLQ92738 828 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 THOC3Q96J01 351 aaKnown RBP4.25□□□□□ -1.73
CD44-235ENST00000532339 NAP1L4Q99733 375 aaKnown RBP4.25□□□□□ -1.73
CD44-235ENST00000532339 GATA5Q9BWX5 397 aaPredicted RBP4.25□□□□□ -1.73
CD44-235ENST00000532339 SORBS1Q9BX66 1292 aaKnown RBP4.25□□□□□ -1.73
CD44-235ENST00000532339 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.25□□□□□ -1.73
CD44-235ENST00000532339 HIPK2Q9H2X6 1198 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 MOV10Q9HCE1 1003 aaKnown RBP4.25□□□□□ -1.73
CD44-235ENST00000532339 C9orf78Q9NZ63 289 aaPredicted RBP4.25□□□□□ -1.73
CD44-235ENST00000532339 MSRB1Q9NZV6 116 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 TRMT112Q9UI30 125 aaKnown RBP4.25□□□□□ -1.73
CD44-235ENST00000532339 LRP12Q9Y561 859 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 COL4A4P53420 1690 aaPredicted RBP4.25□□□□□ -1.73
CD44-235ENST00000532339 IGF2RP11717 2491 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 NBEAQ8NFP9 2946 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 CACNA1IQ9P0X4 2223 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 TRBV5-3A0A0A0MS03 114 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 ZNF814B7Z6K7 855 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 TCP10L2B9ZVM9 353 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 IPO5O00410 1097 aaKnown RBP4.24□□□□□ -1.73
CD44-235ENST00000532339 ZSCAN9O15535 394 aaPredicted RBP4.24□□□□□ -1.73
CD44-235ENST00000532339 UGDHO60701 494 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 ZC3H11AO75152 810 aaKnown RBP eCLIP4.24□□□□□ -1.73
CD44-235ENST00000532339 EPN2O95208 641 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 FGF2P09038 288 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 IDEP14735 1019 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 TBXAS1P24557 533 aaPredicted RBP4.24□□□□□ -1.73
CD44-235ENST00000532339 MST1P26927 711 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 CDKN2AP42771 156 aaKnown RBP4.24□□□□□ -1.73
CD44-235ENST00000532339 RBM5P52756 815 aaKnown RBP eCLIP4.24□□□□□ -1.73
CD44-235ENST00000532339 GAB1Q13480 694 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 RFX8Q6ZV50 586 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 RFX6Q8HWS3 928 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 CCDC28AQ8IWP9 274 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 CERS5Q8N5B7 392 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 PABPC5Q96DU9 382 aaKnown RBP4.24□□□□□ -1.73
CD44-235ENST00000532339 ZNF845Q96IR2 970 aaPredicted RBP4.24□□□□□ -1.73
CD44-235ENST00000532339 KATNAL1Q9BW62 490 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 TRIM2Q9C040 744 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 MLXIPQ9HAP2 919 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 ITM2CQ9NQX7 267 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 MORF4L1Q9UBU8 362 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 ZNF69Q9UC07 566 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 IPO11Q9UI26 975 aaKnown RBP4.24□□□□□ -1.73
CD44-235ENST00000532339 AGO2Q9UKV8 859 aaKnown RBP4.24□□□□□ -1.73
CD44-235ENST00000532339 PNMA2Q9UL42 364 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 PCDHA12Q9UN75 941 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 AGTPBP1Q9UPW5 1226 aa4.24□□□□□ -1.73
CD44-235ENST00000532339 EMSYQ7Z589 1322 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 SALL1Q9NSC2 1324 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 PLXNB2O15031 1838 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 AK9Q5TCS8 1911 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 DSPP15924 2871 aaKnown RBP4.23□□□□□ -1.73
CD44-235ENST00000532339 TMEM8BA6NDV4 472 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 SRRM3A6NNA2 597 aaPredicted RBP4.23□□□□□ -1.73
CD44-235ENST00000532339 PIP5K1BO14986 540 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 ASNA1O43681 348 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 NDUFB8O95169 186 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 PDGFBP01127 241 aaPredicted RBP4.23□□□□□ -1.73
CD44-235ENST00000532339 ENO1P06733 434 aaKnown RBP4.23□□□□□ -1.73
CD44-235ENST00000532339 T-ENOLP0DO92 83 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 PECAM1P16284 738 aaPredicted RBP4.23□□□□□ -1.73
CD44-235ENST00000532339 CDC25AP30304 524 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 MAPK4P31152 587 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 SLC8A1P32418 973 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 GSTM5P46439 218 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 SOX2P48431 317 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 ZNF84P51523 738 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 INPP5JQ15735 1006 aaPredicted RBP4.23□□□□□ -1.73
CD44-235ENST00000532339 MAPKAPK3Q16644 382 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 SLC5A9Q2M3M2 681 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 HSP90AB3PQ58FF7 597 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.23□□□□□ -1.73
CD44-235ENST00000532339 ARL6IP4Q66PJ3 421 aaKnown RBP4.23□□□□□ -1.73
CD44-235ENST00000532339 RAP1GAP2Q684P5 730 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 CCDC70Q6NSX1 233 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 CCDC144NLQ6NUI1 221 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 ACSM6Q6P461 480 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 CYP26C1Q6V0L0 522 aa4.23□□□□□ -1.73
CD44-235ENST00000532339 KYAT3Q6YP21 454 aaKnown RBP4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms