RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 KIAA0895Q8NCT3 520 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 CCDC112Q8NEF3 446 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 PDCD6IPQ8WUM4 868 aaKnown RBP8.34□□□□□ -1.07
CD44-232ENST00000531118 SEMA4DQ92854 862 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 ART4Q93070 314 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 FAM149B1Q96BN6 582 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 DHX58Q96C10 678 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 PDXPQ96GD0 296 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 FAXDC2Q96IV6 333 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 CCDC74BQ96LY2 380 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 RPRD1AQ96P16 312 aaPredicted RBP8.34□□□□□ -1.07
CD44-232ENST00000531118 HAPLN3Q96S86 360 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 C7orf25Q9BPX7 421 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 NUDT22Q9BRQ3 303 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 DDA1Q9BW61 102 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 BLZF1Q9H2G9 400 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 TNKS2Q9H2K2 1166 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 KCTD10Q9H3F6 313 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 RDH14Q9HBH5 336 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 TMEM8AQ9HCN3 771 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 FRMD4BQ9Y2L6 1034 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 MORC2Q9Y6X9 1032 aaPredicted RBP8.34□□□□□ -1.07
CD44-232ENST00000531118 SVILO95425 2214 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 FBN3Q75N90 2809 aa8.34□□□□□ -1.07
CD44-232ENST00000531118 ABCA2Q9BZC7 2435 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 LOC101059948A0A1B0GTJ6 334 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 B4DGG1 531 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 M0QYV0 167 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 TOR1BO14657 336 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 SMAD6O43541 496 aaKnown RBP8.33□□□□□ -1.08
CD44-232ENST00000531118 TSPAN6O43657 245 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 FBXO21O94952 628 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 RASGRP1O95267 797 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 CPNE6O95741 557 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 IGLV3-25P01717 112 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 PDGFAP04085 211 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 FGF3P11487 239 aaPredicted RBP8.33□□□□□ -1.08
CD44-232ENST00000531118 CTSEP14091 401 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 GLB1P16278 677 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 L1CAMP32004 1257 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 EIF4A3P38919 411 aaKnown RBP8.33□□□□□ -1.08
CD44-232ENST00000531118 MXI1P50539 228 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 MC1RQ01726 317 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 CEBPZQ03701 1054 aaKnown RBP8.33□□□□□ -1.08
CD44-232ENST00000531118 HLTFQ14527 1009 aaKnown RBP eCLIP8.33□□□□□ -1.08
CD44-232ENST00000531118 IRF4Q15306 451 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 C14orf28Q4W4Y0 310 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 FBXL22Q6P050 247 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 INTS8Q75QN2 995 aaKnown RBP8.33□□□□□ -1.08
CD44-232ENST00000531118 LYSMD3Q7Z3D4 306 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 SFTPA2Q8IWL1 248 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 DCAF4L2Q8NA75 395 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 TP53I13Q8NBR0 393 aaPredicted RBP8.33□□□□□ -1.08
CD44-232ENST00000531118 CENPTQ96BT3 561 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 TCTN2Q96GX1 697 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 PPP1R9BQ96SB3 815 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 EFHD1Q9BUP0 239 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 C2orf49Q9BVC5 232 aaPredicted RBP8.33□□□□□ -1.08
CD44-232ENST00000531118 MIS12Q9H081 205 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 INTS2Q9H0H0 1204 aaKnown RBP8.33□□□□□ -1.08
CD44-232ENST00000531118 MUC3BQ9H195 1237 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 MAGEF1Q9HAY2 307 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 ERRFI1Q9UJM3 462 aaPredicted RBP8.33□□□□□ -1.08
CD44-232ENST00000531118 KCTD3Q9Y597 815 aa8.33□□□□□ -1.08
CD44-232ENST00000531118 PRRC2CQ9Y520 2896 aaKnown RBP8.32□□□□□ -1.08
CD44-232ENST00000531118 POLEQ07864 2286 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 IGHV5-10-1A0A0J9YXX1 117 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 KCNU1A8MYU2 1149 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 NEMP1O14524 444 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 MAPK13O15264 365 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 NUDT21O43809 227 aaKnown RBP8.32□□□□□ -1.08
CD44-232ENST00000531118 EIF5BO60841 1220 aaKnown RBP8.32□□□□□ -1.08
CD44-232ENST00000531118 RFPL1O75677 317 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 SORBS2O94875 1100 aaKnown RBP8.32□□□□□ -1.08
CD44-232ENST00000531118 RHOCP08134 193 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 VDRP11473 427 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 PRF1P14222 555 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 TCN2P20062 427 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 PDCP20941 246 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 CCNHP51946 323 aaPredicted RBP8.32□□□□□ -1.08
CD44-232ENST00000531118 COPB1P53618 953 aaKnown RBP8.32□□□□□ -1.08
CD44-232ENST00000531118 PITX1P78337 314 aaPredicted RBP8.32□□□□□ -1.08
CD44-232ENST00000531118 KRT83P78385 493 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 B4GALNT1Q00973 533 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 MRPL49Q13405 166 aaKnown RBP8.32□□□□□ -1.08
CD44-232ENST00000531118 NFATC4Q14934 902 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 TLR1Q15399 786 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 CRTC2Q53ET0 693 aaPredicted RBP8.32□□□□□ -1.08
CD44-232ENST00000531118 SYPL2Q5VXT5 272 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 KCTD16Q68DU8 428 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 KRT39Q6A163 491 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 C16orf46Q6P387 395 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 FAM173BQ6P4H8 233 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 LCLAT1Q6UWP7 414 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 LINGO4Q6UY18 593 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 PIM3Q86V86 326 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 UNC5BQ8IZJ1 945 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 NLGN4XQ8N0W4 816 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 UBR7Q8N806 425 aa8.32□□□□□ -1.08
CD44-232ENST00000531118 NLGN4YQ8NFZ3 816 aaPredicted RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms