RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 ERVK-5Q9HDB9 667 aa7.58□□□□□ -1.2
CSDE1-213ENST00000530784 PAPOLBQ9NRJ5 636 aaKnown RBP7.58□□□□□ -1.2
CSDE1-213ENST00000530784 ZBTB40Q9NUA8 1239 aa7.58□□□□□ -1.2
CSDE1-213ENST00000530784 POT1Q9NUX5 634 aa7.58□□□□□ -1.2
CSDE1-213ENST00000530784 IPO11Q9UI26 975 aaKnown RBP7.58□□□□□ -1.2
CSDE1-213ENST00000530784 RAB21Q9UL25 225 aa7.58□□□□□ -1.2
CSDE1-213ENST00000530784 SLC4A4Q9Y6R1 1079 aa7.58□□□□□ -1.2
CSDE1-213ENST00000530784 ROBO3Q96MS0 1386 aa7.58□□□□□ -1.2
CSDE1-213ENST00000530784 A0A087WV62 115 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 TRBV5-3A0A0A0MS03 114 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 CNTN5O94779 1100 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 TNFRSF6BO95407 300 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 SETSIPP0DME0 302 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 COPB2P35606 906 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 TWIST1Q15672 202 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 MIDNQ504T8 468 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 PRAMEF19Q5SWL8 479 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 FAM109BQ6ICB4 259 aaPredicted RBP7.57□□□□□ -1.2
CSDE1-213ENST00000530784 SAMD3Q8N6K7 520 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 C9orf106Q8NAJ2 232 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 ZNF527Q8NB42 609 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 OR1N1Q8NGS0 311 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 FAM71BQ8TC56 605 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 ZNF347Q96SE7 839 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 PIMREGQ9BSJ6 248 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 MECRQ9BV79 373 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 LRRCC1Q9C099 1032 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 WDR12Q9GZL7 423 aaKnown RBP7.57□□□□□ -1.2
CSDE1-213ENST00000530784 NRBP1Q9UHY1 535 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 SLC12A4Q9UP95 1085 aa7.57□□□□□ -1.2
CSDE1-213ENST00000530784 LGALS16A8MUM7 142 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 ZNF814B7Z6K7 855 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 VWA5AO00534 786 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 PGK2P07205 417 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 PSG1P11464 419 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 HTR3AP46098 478 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 FOXL2P58012 376 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 FAM3BP58499 235 aaPredicted RBP7.56□□□□□ -1.2
CSDE1-213ENST00000530784 TAS2R50P59544 299 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 SHC2P98077 582 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 LEXMQ3ZCV2 418 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 FAM83BQ5T0W9 1011 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 CTR9Q6PD62 1173 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 MMP21Q8N119 569 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 MPLKIPQ8TAP9 179 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 BADQ92934 168 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 GUCD1Q96NT3 240 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 MSRB1Q9NZV6 116 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 CNPY2Q9Y2B0 182 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 LRCH1Q9Y2L9 728 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 LTBP2Q14767 1821 aa7.56□□□□□ -1.2
CSDE1-213ENST00000530784 TLX3O43711 291 aaPredicted RBP7.55□□□□□ -1.2
CSDE1-213ENST00000530784 NTN1O95631 604 aa7.55□□□□□ -1.2
CSDE1-213ENST00000530784 CLTBP09497 229 aa7.55□□□□□ -1.2
CSDE1-213ENST00000530784 TGM2P21980 687 aa7.55□□□□□ -1.2
CSDE1-213ENST00000530784 TLE3Q04726 772 aa7.55□□□□□ -1.2
CSDE1-213ENST00000530784 PTK2BQ14289 1009 aa7.55□□□□□ -1.2
CSDE1-213ENST00000530784 SHHQ15465 462 aa7.55□□□□□ -1.2
CSDE1-213ENST00000530784 PFKFB4Q16877 469 aa7.55□□□□□ -1.2
CSDE1-213ENST00000530784 BTBD16Q32M84 506 aa7.55□□□□□ -1.2
CSDE1-213ENST00000530784 C9orf50Q5SZB4 431 aa7.55□□□□□ -1.2
CSDE1-213ENST00000530784 PGBD2Q6P3X8 592 aa7.55□□□□□ -1.2
CSDE1-213ENST00000530784 ADGRF3Q8IZF5 1079 aa7.55□□□□□ -1.2
CSDE1-213ENST00000530784 SLF1Q9BQI6 1058 aa7.55□□□□□ -1.2
CSDE1-213ENST00000530784 TEX13BQ9BXU2 312 aa7.55□□□□□ -1.2
CSDE1-213ENST00000530784 SEMA4BQ9NPR2 832 aaPredicted RBP7.55□□□□□ -1.2
CSDE1-213ENST00000530784 ECHDC1Q9NTX5 307 aa7.55□□□□□ -1.2
CSDE1-213ENST00000530784 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.55□□□□□ -1.2
CSDE1-213ENST00000530784 AGO2Q9UKV8 859 aaKnown RBP7.55□□□□□ -1.2
CSDE1-213ENST00000530784 NFU1Q9UMS0 254 aa7.55□□□□□ -1.2
CSDE1-213ENST00000530784 COG5Q9UP83 839 aa7.55□□□□□ -1.2
CSDE1-213ENST00000530784 RLFQ13129 1914 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 F5H6K3 240 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 PRPF4O43172 522 aaKnown RBP eCLIP7.54□□□□□ -1.2
CSDE1-213ENST00000530784 TULP3O75386 442 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 NDUFB10O96000 172 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 PGK1P00558 417 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 ALDOAP04075 364 aaKnown RBP7.54□□□□□ -1.2
CSDE1-213ENST00000530784 CYP3A4P08684 503 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 IGFBP2P18065 325 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 GRK5P34947 590 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 TDO2P48775 406 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 TLE2Q04725 743 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 KLRC3Q07444 240 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 SBK1Q52WX2 424 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 ZNF569Q5MCW4 686 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 SNRNP48Q6IEG0 339 aaKnown RBP7.54□□□□□ -1.2
CSDE1-213ENST00000530784 COLCA1Q6ZS62 124 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 EXD3Q8N9H8 876 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 FAM47BQ8NA70 645 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 KBTBD3Q8NAB2 608 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 OR52N4Q8NGI2 321 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 MSI2Q96DH6 328 aaKnown RBP7.54□□□□□ -1.2
CSDE1-213ENST00000530784 SFXN1Q9H9B4 322 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 NYAP2Q9P242 653 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 UTS2RQ9UKP6 389 aa7.54□□□□□ -1.2
CSDE1-213ENST00000530784 ZHX1Q9UKY1 873 aaPredicted RBP7.54□□□□□ -1.2
CSDE1-213ENST00000530784 SYNRGQ9UMZ2 1314 aa7.53□□□□□ -1.2
CSDE1-213ENST00000530784 COL6A3P12111 3177 aa7.53□□□□□ -1.2
CSDE1-213ENST00000530784 ABHD14A-ACY1A0A1B0GW23 586 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms