RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ANKS1BQ7Z6G8 1248 aa13.23□□□□□ -0.29
TCOF1-213ENST00000514442 OR8H2Q8N162 312 aa13.23□□□□□ -0.29
TCOF1-213ENST00000514442 ACTRT2Q8TDY3 377 aa13.23□□□□□ -0.29
TCOF1-213ENST00000514442 OTULINQ96BN8 352 aa13.23□□□□□ -0.29
TCOF1-213ENST00000514442 MRPL17Q9NRX2 175 aaKnown RBP13.23□□□□□ -0.29
TCOF1-213ENST00000514442 EVPLLA8MZ36 301 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 FZD9O00144 591 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 NDUFB5O43674 189 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 SEC24AO95486 1093 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 KLF10Q13118 480 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 FASTKQ14296 549 aaKnown RBP13.22□□□□□ -0.29
TCOF1-213ENST00000514442 KCNA10Q16322 511 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 PSTKQ8IV42 348 aaKnown RBP13.22□□□□□ -0.29
TCOF1-213ENST00000514442 CD99L2Q8TCZ2 262 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 SHISA4Q96DD7 197 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 THUMPD3Q9BV44 507 aaKnown RBP13.22□□□□□ -0.29
TCOF1-213ENST00000514442 TRIM45Q9H8W5 580 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-213ENST00000514442 NR5A2O00482 541 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 CHADO15335 359 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 CILPO75339 1184 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 KATNA1O75449 491 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 ERCC2P18074 760 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 RPL9P32969 192 aaKnown RBP13.22□□□□□ -0.29
TCOF1-213ENST00000514442 MATKP42679 507 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 PRKAA2P54646 552 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 TPTEP56180 551 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 RUNX1T1Q06455 604 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 TOP6BLQ8N6T0 577 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 PNPOQ9NVS9 261 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 HTR3EA5X5Y0 456 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 TMEM88BA6NKF7 163 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 TPP1O14773 563 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 MMP8P22894 467 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 FMO4P31512 558 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 RPL14P50914 215 aaKnown RBP13.22□□□□□ -0.29
TCOF1-213ENST00000514442 MAXP61244 160 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 TRAF3Q13114 568 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 ACOX2Q99424 681 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 POLR1EQ9GZS1 481 aaKnown RBP13.22□□□□□ -0.29
TCOF1-213ENST00000514442 OSGEPL1Q9H4B0 414 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 FETUBQ9UGM5 382 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 PADI3Q9ULW8 664 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 MSI1O43347 362 aaKnown RBP13.22□□□□□ -0.29
TCOF1-213ENST00000514442 ITM2AO43736 263 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 TOMM70O94826 608 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 ZBTB48P10074 688 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-213ENST00000514442 MYLK3Q32MK0 819 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 MTX3Q5HYI7 312 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 DCLRE1AQ6PJP8 1040 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 ADGRG6Q86SQ4 1221 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 PRKD2Q9BZL6 878 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 MPP6Q9NZW5 540 aa13.22□□□□□ -0.29
TCOF1-213ENST00000514442 UXTQ9UBK9 157 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-213ENST00000514442 CICQ96RK0 1608 aaPredicted RBP13.21□□□□□ -0.29
TCOF1-213ENST00000514442 CENPXA8MT69 81 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 CLDN25C9JDP6 229 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 CCNT2O60583 730 aaKnown RBP13.21□□□□□ -0.29
TCOF1-213ENST00000514442 PCDH8O95206 1070 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 IDO1P14902 403 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 CHRNB3Q05901 458 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 BOP1Q14137 746 aaKnown RBP13.21□□□□□ -0.29
TCOF1-213ENST00000514442 ZBED5Q49AG3 693 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 OTUD3Q5T2D3 398 aaPredicted RBP13.21□□□□□ -0.29
TCOF1-213ENST00000514442 HECTD3Q5T447 861 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 XYLT1Q86Y38 959 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 SYTL1Q8IYJ3 562 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 DAW1Q8N136 415 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 MIER2Q8N344 545 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 C12orf42Q96LP6 360 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 VAT1Q99536 393 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 DPEP3Q9H4B8 488 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 MAN1C1Q9NR34 630 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 EIF3LQ9Y262 564 aaKnown RBP13.21□□□□□ -0.29
TCOF1-213ENST00000514442 KLRG2A4D1S0 409 aaPredicted RBP13.21□□□□□ -0.29
TCOF1-213ENST00000514442 MTA2O94776 668 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 SPATA31D3P0C874 917 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 HIST2H2ACQ16777 129 aaPredicted RBP13.21□□□□□ -0.29
TCOF1-213ENST00000514442 ARMC4Q5T2S8 1044 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 HIST2H2AA3Q6FI13 130 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 SPATA31D4Q6ZUB0 917 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 SIAH1Q8IUQ4 282 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 ITPKCQ96DU7 683 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 MCRS1Q96EZ8 462 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 EXOC2Q96KP1 924 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 ZNF670Q9BS34 389 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 ST6GALNAC4Q9H4F1 302 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 LIN28AQ9H9Z2 209 aaKnown RBP13.21□□□□□ -0.29
TCOF1-213ENST00000514442 APOBEC3GQ9HC16 384 aaKnown RBP13.21□□□□□ -0.29
TCOF1-213ENST00000514442 AJAP1Q9UKB5 411 aaPredicted RBP13.21□□□□□ -0.29
TCOF1-213ENST00000514442 SPEF2Q9C093 1822 aa13.21□□□□□ -0.29
TCOF1-213ENST00000514442 TMEM114B3SHH9 223 aa13.21□□□□□ -0.3
TCOF1-213ENST00000514442 EPB42P16452 691 aa13.21□□□□□ -0.3
TCOF1-213ENST00000514442 SERPINH1P50454 418 aaKnown RBP13.21□□□□□ -0.3
TCOF1-213ENST00000514442 BIRC8Q96P09 236 aa13.21□□□□□ -0.3
TCOF1-213ENST00000514442 FGF10O15520 208 aaPredicted RBP13.21□□□□□ -0.3
TCOF1-213ENST00000514442 PIRTP0C851 137 aa13.21□□□□□ -0.3
TCOF1-213ENST00000514442 MSX2P35548 267 aaPredicted RBP13.21□□□□□ -0.3
TCOF1-213ENST00000514442 GRIA3P42263 894 aa13.21□□□□□ -0.3
TCOF1-213ENST00000514442 RABGGTBP53611 331 aa13.21□□□□□ -0.3
TCOF1-213ENST00000514442 RAB14P61106 215 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms