RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 NECTIN3Q9NQS3 549 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 C14orf105Q9NVL8 296 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF639Q9UID6 485 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 PIN4Q9Y237 131 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 HEG1Q9ULI3 1381 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 E7ENX8 843 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 PCDHGA12O60330 932 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 TADA2AO75478 443 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 NTRK1P04629 796 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 UGT2B4P06133 528 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 ODC1P11926 461 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 CTSKP43235 329 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 DCDC1P59894 354 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 CBWD3Q5JTY5 395 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 PCID2Q5JVF3 399 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 CBWD5Q5RIA9 395 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 RBM48Q5RL73 367 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 RETSATQ6NUM9 610 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 LDHDQ86WU2 507 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 OR5J2Q8NH18 312 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 DNAJB8Q8NHS0 232 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 SH3RF3Q8TEJ3 882 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 GTF3C2Q8WUA4 911 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 ASB12Q8WXK4 309 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 OXCT2Q9BYC2 517 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 COG5Q9UP83 839 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 RBM7Q9Y580 266 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 CLCA1A8K7I4 914 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 OR10H3O60404 316 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 USP12O75317 370 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 KDM4BO94953 1096 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 SCELO95171 688 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 OTCP00480 354 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 YAP1P46937 504 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 RFX3P48380 749 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 RORCP51449 518 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 CLNKQ7Z7G1 428 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 ART4Q93070 314 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 CLPTM1LQ96KA5 538 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 RAVER2Q9HCJ3 691 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 SPATA7Q9P0W8 599 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 LOC102724428A0A0B4J2F2 783 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 RSL1D1O76021 490 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 PENKP01210 267 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 DCKP27707 260 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 SIK1P57059 783 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 PPP2R2BQ00005 443 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 RALGDSQ12967 914 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF470Q6ECI4 717 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 HAGHLQ6PII5 290 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 AMIGO2Q86SJ2 522 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 HERC6Q8IVU3 1022 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF548Q8NEK5 533 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 BAP1Q92560 729 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 GAL3ST3Q96A11 431 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 RCN3Q96D15 328 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 PCDH18Q9HCL0 1135 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 HPF1Q9NWY4 346 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 DNAJC28Q9NX36 388 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 REXO2Q9Y3B8 237 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 RAPGEF6Q8TEU7 1601 aa11.29□□□□□ -0.6
LIMCH1-217ENST00000512946 GCC2Q8IWJ2 1684 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 TRIM3O75382 744 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 IGFBP5P24593 272 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 PRKCIP41743 596 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 CRATP43155 626 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 ALDH9A1P49189 494 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 CACNB3P54284 484 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 NAGLUP54802 743 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 HUNKP57058 714 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 SPIBQ01892 262 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 C10orf120Q5SQS8 335 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 WDR49Q8IV35 697 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 DAW1Q8N136 415 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 OR2T12Q8NG77 320 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 NKX2-3Q8TAU0 364 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 SELENOMQ8WWX9 145 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 KLHL5Q96PQ7 755 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 TCEAL7Q9BRU2 100 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 RBM22Q9NW64 420 aaKnown RBP eCLIP11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 RCOR3Q9P2K3 495 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF99A8MXY4 864 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 DHX15O43143 795 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 AP2A2O94973 939 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 STAU1O95793 577 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 HLA-DQA2P01906 255 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 TFRCP02786 760 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 ITGA4P13612 1032 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 AP2S1P53680 142 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 DPYSL3Q14195 570 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 PTPAQ15257 358 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 C6orf52Q5T4I8 152 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 NOTUMQ6P988 496 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 IQCF2Q8IXL9 164 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 PHC3Q8NDX5 983 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF451Q9Y4E5 1061 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 NMT2O60551 498 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 ULK1O75385 1050 aa11.28□□□□□ -0.6
LIMCH1-217ENST00000512946 NT5DC1Q5TFE4 455 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms