RNA–Protein interactions for RNA: ENST00000497544.2

CTSD-206, Transcript of cathepsin D, humanhuman

TSL 2

Gene CTSD, Length 783 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-206ENST00000497544 NIPAL4Q0D2K0 466 aa20.24■□□□□ 0.83
CTSD-206ENST00000497544 ALG1LQ6GMV1 187 aa20.24■□□□□ 0.83
CTSD-206ENST00000497544 CCDC137Q6PK04 289 aaKnown RBP20.24■□□□□ 0.83
CTSD-206ENST00000497544 TSSK4Q6SA08 328 aa20.24■□□□□ 0.83
CTSD-206ENST00000497544 ARHGEF18Q6ZSZ5 1173 aa20.24■□□□□ 0.83
CTSD-206ENST00000497544 RASSF3Q86WH2 238 aa20.24■□□□□ 0.83
CTSD-206ENST00000497544 C12orf50Q8NA57 414 aaPredicted RBP20.24■□□□□ 0.83
CTSD-206ENST00000497544 MDGA1Q8NFP4 955 aa20.24■□□□□ 0.83
CTSD-206ENST00000497544 ZNF641Q96N77 438 aaPredicted RBP20.24■□□□□ 0.83
CTSD-206ENST00000497544 SPATA13Q96N96 652 aa20.24■□□□□ 0.83
CTSD-206ENST00000497544 SUV39H2Q9H5I1 410 aa20.24■□□□□ 0.83
CTSD-206ENST00000497544 RSPH14Q9UHP6 348 aa20.24■□□□□ 0.83
CTSD-206ENST00000497544 NCKAP1Q9Y2A7 1128 aa20.24■□□□□ 0.83
CTSD-206ENST00000497544 CCDC188H7C350 402 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 AXIN1O15169 862 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 MID1O15344 667 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 GDF9O60383 454 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 OPHN1O60890 802 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 GJB3O75712 270 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 PIGNO95427 931 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 UGT2B4P06133 528 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 NFKB1P19838 968 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 SERPINA4P29622 427 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 CD68P34810 354 aaPredicted RBP20.23■□□□□ 0.83
CTSD-206ENST00000497544 CCDC15Q0P6D6 951 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 PRPSAP1Q14558 356 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 LPAL2Q16609 132 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 P3H1Q32P28 736 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 POM121L1PQ3SYA9 428 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 TTC31Q49AM3 519 aaPredicted RBP20.23■□□□□ 0.83
CTSD-206ENST00000497544 ZNF805Q5CZA5 627 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 CFAP58Q5T655 872 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 CAMK1DQ8IU85 385 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 ARRDC2Q8TBH0 407 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 GRK7Q8WTQ7 553 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 RTP4Q96DX8 246 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 PPP1R16AQ96I34 528 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 KLHL32Q96NJ5 620 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 FCRL5Q96RD9 977 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 OMDQ99983 421 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 PCDHGC4Q9Y5F7 938 aa20.23■□□□□ 0.83
CTSD-206ENST00000497544 ASH1LQ9NR48 2969 aaKnown RBP20.23■□□□□ 0.83
CTSD-206ENST00000497544 ZNF217O75362 1048 aa20.22■□□□□ 0.83
CTSD-206ENST00000497544 CD86P42081 329 aa20.22■□□□□ 0.83
CTSD-206ENST00000497544 FNTAP49354 379 aa20.22■□□□□ 0.83
CTSD-206ENST00000497544 WHAMMP3Q1A5X7 153 aa20.22■□□□□ 0.83
CTSD-206ENST00000497544 UNQ6494/PRO21346Q6UXR6 183 aa20.22■□□□□ 0.83
CTSD-206ENST00000497544 KLHL7Q8IXQ5 586 aa20.22■□□□□ 0.83
CTSD-206ENST00000497544 HDDC3Q8N4P3 179 aa20.22■□□□□ 0.83
CTSD-206ENST00000497544 IMP4Q96G21 291 aaKnown RBP20.22■□□□□ 0.83
CTSD-206ENST00000497544 RUNDC3BQ96NL0 473 aa20.22■□□□□ 0.83
CTSD-206ENST00000497544 RBM15Q96T37 977 aaKnown RBP eCLIP20.22■□□□□ 0.83
CTSD-206ENST00000497544 TPSD1Q9BZJ3 242 aa20.22■□□□□ 0.83
CTSD-206ENST00000497544 DDX47Q9H0S4 455 aaKnown RBP20.22■□□□□ 0.83
CTSD-206ENST00000497544 PABPC3Q9H361 631 aaKnown RBP20.22■□□□□ 0.83
CTSD-206ENST00000497544 ITM2CQ9NQX7 267 aa20.22■□□□□ 0.83
CTSD-206ENST00000497544 FBXL12Q9NXK8 326 aa20.22■□□□□ 0.83
CTSD-206ENST00000497544 CCDC163A0A0D9SF12 145 aa20.21■□□□□ 0.83
CTSD-206ENST00000497544 A0A1W2PP55 124 aa20.21■□□□□ 0.83
CTSD-206ENST00000497544 F5H423 210 aaPredicted RBP20.21■□□□□ 0.83
CTSD-206ENST00000497544 ANXA9O76027 345 aa20.21■□□□□ 0.83
CTSD-206ENST00000497544 ZIC2O95409 532 aaPredicted RBP20.21■□□□□ 0.83
CTSD-206ENST00000497544 C7P10643 843 aa20.21■□□□□ 0.83
CTSD-206ENST00000497544 CA4P22748 312 aa20.21■□□□□ 0.83
CTSD-206ENST00000497544 FNTBP49356 437 aa20.21■□□□□ 0.83
CTSD-206ENST00000497544 PARP6Q2NL67 630 aa20.21■□□□□ 0.83
CTSD-206ENST00000497544 TTC27Q6P3X3 843 aa20.21■□□□□ 0.83
CTSD-206ENST00000497544 PRR23CQ6ZRP0 262 aa20.21■□□□□ 0.83
CTSD-206ENST00000497544 SPATA4Q8NEY3 305 aa20.21■□□□□ 0.83
CTSD-206ENST00000497544 PDCD6IPQ8WUM4 868 aaKnown RBP20.21■□□□□ 0.83
CTSD-206ENST00000497544 NSMCE3Q96MG7 304 aa20.21■□□□□ 0.83
CTSD-206ENST00000497544 PPP1R2P1Q96PQ5 205 aa20.21■□□□□ 0.83
CTSD-206ENST00000497544 GBA3Q9H227 469 aa20.21■□□□□ 0.83
CTSD-206ENST00000497544 FAM153AQ9UHL3 310 aa20.21■□□□□ 0.83
CTSD-206ENST00000497544 RAI2Q9Y5P3 530 aa20.21■□□□□ 0.83
CTSD-206ENST00000497544 A0A1W2PQ67 120 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 LRP3O75074 770 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 SOCS5O75159 536 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 RNASEH2AO75792 299 aaKnown RBP20.2■□□□□ 0.82
CTSD-206ENST00000497544 MMP2P08253 660 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 ETS1P14921 441 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 XPAP23025 273 aaPredicted RBP20.2■□□□□ 0.82
CTSD-206ENST00000497544 ITGB7P26010 798 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 PSMB4P28070 264 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 METAP1P53582 386 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 SKOR1P84550 965 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 USP39Q53GS9 565 aaKnown RBP20.2■□□□□ 0.82
CTSD-206ENST00000497544 ARMC12Q5T9G4 340 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 FBXL19Q6PCT2 694 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 C4orf22Q6V702 233 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.2■□□□□ 0.82
CTSD-206ENST00000497544 USP30Q70CQ3 517 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 PRUNE1Q86TP1 453 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 TTC7BQ86TV6 843 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 PRPF39Q86UA1 669 aaKnown RBP20.2■□□□□ 0.82
CTSD-206ENST00000497544 KBTBD6Q86V97 674 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 KDF1Q8NAX2 398 aaPredicted RBP20.2■□□□□ 0.82
CTSD-206ENST00000497544 SPATA22Q8NHS9 363 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 HCAR2Q8TDS4 363 aa20.2■□□□□ 0.82
CTSD-206ENST00000497544 ARRDC3Q96B67 414 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms