RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 TRAFD1O14545 582 aaPredicted RBP17.25■□□□□ 0.35
HDAC6-235ENST00000495515 AP1G1O43747 822 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 ITGAVP06756 1048 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 TBC1D3HP0C7X1 549 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 PAFAH1B1P43034 410 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 LMNB2Q03252 620 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 NIPAL4Q0D2K0 466 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 ELP6Q0PNE2 266 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 SNX1Q13596 522 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 PRPSAP1Q14558 356 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 OASLQ15646 514 aaKnown RBP17.25■□□□□ 0.35
HDAC6-235ENST00000495515 UGP2Q16851 508 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 ANKRD20A2Q5SQ80 823 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 SYCP2LQ5T4T6 812 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 ANKRD20A1Q5TYW2 823 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 ANKRD20A3Q5VUR7 823 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 PMS2CLQ68D20 193 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 TBC1D3GQ6DHY5 549 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 TBC1D3CQ6IPX1 549 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 NEK5Q6P3R8 708 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 ARHGEF18Q6ZSZ5 1173 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 ZSCAN30Q86W11 494 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 TBC1D3Q8IZP1 549 aaPredicted RBP17.25■□□□□ 0.35
HDAC6-235ENST00000495515 SPOCK2Q92563 424 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 VOPP1Q96AW1 172 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 C16orf45Q96MC5 204 aaPredicted RBP17.25■□□□□ 0.35
HDAC6-235ENST00000495515 FCRL5Q96RD9 977 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 PHOX2BQ99453 314 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 VPS45Q9NRW7 570 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 PCDHB9Q9Y5E1 797 aa17.25■□□□□ 0.35
HDAC6-235ENST00000495515 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 GOLGA6CA6NDK9 693 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 GOLGA6BA6NDN3 693 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 ZNF185O15231 689 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 TSPAN6O43657 245 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 GCATO75600 419 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 ANXA9O76027 345 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 PGLSO95336 258 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 CPP00450 1065 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 GOLGA6DP0CG33 693 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 TIMP2P16035 220 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 NFKB1P19838 968 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 DPP6P42658 865 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 EPHB1P54762 984 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 RPL26P61254 145 aaKnown RBP17.24■□□□□ 0.35
HDAC6-235ENST00000495515 SKOR1P84550 965 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 TRAF2Q12933 501 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 P3H1Q32P28 736 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 CCDC70Q6NSX1 233 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 TMEFF1Q8IYR6 380 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 PRELID2Q8N945 189 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 CCDC89Q8N998 374 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 LRRC45Q96CN5 670 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 LOXL4Q96JB6 756 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 FEM1CQ96JP0 617 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 RBM15Q96T37 977 aaKnown RBP eCLIP17.24■□□□□ 0.35
HDAC6-235ENST00000495515 TDRD1Q9BXT4 1180 aaKnown RBP17.24■□□□□ 0.35
HDAC6-235ENST00000495515 ADGRE3Q9BY15 652 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 GBA3Q9H227 469 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 FAM86C1Q9NVL1 165 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 GOLGA6AQ9NYA3 693 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 FAM153AQ9UHL3 310 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 FEZ2Q9UHY8 353 aaPredicted RBP17.24■□□□□ 0.35
HDAC6-235ENST00000495515 PHTF1Q9UMS5 762 aa17.24■□□□□ 0.35
HDAC6-235ENST00000495515 RPL26L1Q9UNX3 145 aaKnown RBP17.24■□□□□ 0.35
HDAC6-235ENST00000495515 METTL12A8MUP2 240 aa17.23■□□□□ 0.35
HDAC6-235ENST00000495515 MEI4A8MW99 385 aa17.23■□□□□ 0.35
HDAC6-235ENST00000495515 PCDH8O95206 1070 aa17.23■□□□□ 0.35
HDAC6-235ENST00000495515 IFNB1P01574 187 aa17.23■□□□□ 0.35
HDAC6-235ENST00000495515 CD68P34810 354 aaPredicted RBP17.23■□□□□ 0.35
HDAC6-235ENST00000495515 DHPSP49366 369 aaPredicted RBP17.23■□□□□ 0.35
HDAC6-235ENST00000495515 WDR45BQ5MNZ6 344 aa17.23■□□□□ 0.35
HDAC6-235ENST00000495515 KIAA0895LQ68EN5 471 aa17.23■□□□□ 0.35
HDAC6-235ENST00000495515 GSTA5Q7RTV2 222 aa17.23■□□□□ 0.35
HDAC6-235ENST00000495515 PRPF39Q86UA1 669 aaKnown RBP17.23■□□□□ 0.35
HDAC6-235ENST00000495515 CCDC110Q8TBZ0 833 aa17.23■□□□□ 0.35
HDAC6-235ENST00000495515 MAGOHBQ96A72 148 aaKnown RBP17.23■□□□□ 0.35
HDAC6-235ENST00000495515 RTP4Q96DX8 246 aa17.23■□□□□ 0.35
HDAC6-235ENST00000495515 IFT43Q96FT9 208 aa17.23■□□□□ 0.35
HDAC6-235ENST00000495515 CAPZA3Q96KX2 299 aa17.23■□□□□ 0.35
HDAC6-235ENST00000495515 NSMCE3Q96MG7 304 aa17.23■□□□□ 0.35
HDAC6-235ENST00000495515 AP1M1Q9BXS5 423 aa17.23■□□□□ 0.35
HDAC6-235ENST00000495515 PCDH9Q9HC56 1237 aa17.23■□□□□ 0.35
HDAC6-235ENST00000495515 SMG5Q9UPR3 1016 aaKnown RBP17.23■□□□□ 0.35
HDAC6-235ENST00000495515 AAR2Q9Y312 384 aaKnown RBP17.23■□□□□ 0.35
HDAC6-235ENST00000495515 FADS3Q9Y5Q0 445 aa17.23■□□□□ 0.35
HDAC6-235ENST00000495515 SHROOM3Q8TF72 1996 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 PRR23AA6NEV1 266 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 AREL1O15033 823 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 FSBPO95073 299 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 LMNAP02545 664 aaKnown RBP17.22■□□□□ 0.35
HDAC6-235ENST00000495515 MMP2P08253 660 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 CYP2A6P11509 494 aaPredicted RBP17.22■□□□□ 0.35
HDAC6-235ENST00000495515 NUDT1P36639 197 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 ABL2P42684 1182 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 CCR5P51681 352 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 GEMP55040 296 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 TAS2R38P59533 333 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 MPP3Q13368 585 aa17.22■□□□□ 0.35
HDAC6-235ENST00000495515 PARP6Q2NL67 630 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms