RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TMLHEQ9NVH6 421 aa3.2□□□□□ -1.9
SMC4-220ENST00000488017 FAM118AQ9NWS6 357 aa3.2□□□□□ -1.9
SMC4-220ENST00000488017 BAG5Q9UL15 447 aa3.2□□□□□ -1.9
SMC4-220ENST00000488017 RCE1Q9Y256 329 aa3.2□□□□□ -1.9
SMC4-220ENST00000488017 CLDN16Q9Y5I7 305 aa3.2□□□□□ -1.9
SMC4-220ENST00000488017 INHBAP08476 426 aa3.19□□□□□ -1.9
SMC4-220ENST00000488017 PATE4P0C8F1 98 aa3.19□□□□□ -1.9
SMC4-220ENST00000488017 CHN1P15882 459 aa3.19□□□□□ -1.9
SMC4-220ENST00000488017 RXRAP19793 462 aa3.19□□□□□ -1.9
SMC4-220ENST00000488017 NR1D1P20393 614 aa3.19□□□□□ -1.9
SMC4-220ENST00000488017 SP100P23497 879 aaPredicted RBP3.19□□□□□ -1.9
SMC4-220ENST00000488017 RELQ04864 619 aaPredicted RBP3.19□□□□□ -1.9
SMC4-220ENST00000488017 SLC18A2Q05940 514 aa3.19□□□□□ -1.9
SMC4-220ENST00000488017 RPE65Q16518 533 aa3.19□□□□□ -1.9
SMC4-220ENST00000488017 PPP6R3Q5H9R7 873 aaPredicted RBP3.19□□□□□ -1.9
SMC4-220ENST00000488017 CCNYL2Q5T2Q4 361 aa3.19□□□□□ -1.9
SMC4-220ENST00000488017 RASSF8Q8NHQ8 419 aa3.19□□□□□ -1.9
SMC4-220ENST00000488017 JDP2Q8WYK2 163 aa3.19□□□□□ -1.9
SMC4-220ENST00000488017 C18orf8Q96DM3 657 aa3.19□□□□□ -1.9
SMC4-220ENST00000488017 CLPBQ9H078 707 aa3.19□□□□□ -1.9
SMC4-220ENST00000488017 PLEKHA5Q9HAU0 1116 aa3.19□□□□□ -1.9
SMC4-220ENST00000488017 SPATS2LQ9NUQ6 558 aaKnown RBP3.19□□□□□ -1.9
SMC4-220ENST00000488017 CACNA1FO60840 1977 aa3.18□□□□□ -1.9
SMC4-220ENST00000488017 BLOC1S5-TXNDC5H3BN57 136 aa3.18□□□□□ -1.9
SMC4-220ENST00000488017 ZIC3O60481 467 aa3.18□□□□□ -1.9
SMC4-220ENST00000488017 HLA-DOBP13765 273 aa3.18□□□□□ -1.9
SMC4-220ENST00000488017 ARSAP15289 507 aa3.18□□□□□ -1.9
SMC4-220ENST00000488017 GJC1P36383 396 aa3.18□□□□□ -1.9
SMC4-220ENST00000488017 IRX1P78414 480 aaPredicted RBP3.18□□□□□ -1.9
SMC4-220ENST00000488017 CEACAM20Q6UY09 585 aa3.18□□□□□ -1.9
SMC4-220ENST00000488017 RAB11FIP2Q7L804 512 aa3.18□□□□□ -1.9
SMC4-220ENST00000488017 FAM177A1Q8N128 213 aaPredicted RBP3.18□□□□□ -1.9
SMC4-220ENST00000488017 KLHDC9Q8NEP7 349 aa3.18□□□□□ -1.9
SMC4-220ENST00000488017 HCAR2Q8TDS4 363 aa3.18□□□□□ -1.9
SMC4-220ENST00000488017 CPT1BQ92523 772 aa3.18□□□□□ -1.9
SMC4-220ENST00000488017 MUL1Q969V5 352 aa3.18□□□□□ -1.9
SMC4-220ENST00000488017 YME1L1Q96TA2 773 aa3.18□□□□□ -1.9
SMC4-220ENST00000488017 LRRC1Q9BTT6 524 aa3.18□□□□□ -1.9
SMC4-220ENST00000488017 C1RLQ9NZP8 487 aa3.18□□□□□ -1.9
SMC4-220ENST00000488017 NLKQ9UBE8 527 aa3.18□□□□□ -1.9
SMC4-220ENST00000488017 C19orf53Q9UNZ5 99 aaPredicted RBP3.18□□□□□ -1.9
SMC4-220ENST00000488017 RASA4O43374 803 aa3.17□□□□□ -1.9
SMC4-220ENST00000488017 ATF3P18847 181 aa3.17□□□□□ -1.9
SMC4-220ENST00000488017 TTKP33981 857 aa3.17□□□□□ -1.9
SMC4-220ENST00000488017 MTNR1AP48039 350 aa3.17□□□□□ -1.9
SMC4-220ENST00000488017 ZNF239Q16600 458 aaKnown RBP3.17□□□□□ -1.9
SMC4-220ENST00000488017 ME3Q16798 604 aa3.17□□□□□ -1.9
SMC4-220ENST00000488017 GALNTL6Q49A17 601 aa3.17□□□□□ -1.9
SMC4-220ENST00000488017 TCTE1Q5JU00 501 aa3.17□□□□□ -1.9
SMC4-220ENST00000488017 DGAT2L7PQ6IED9 249 aa3.17□□□□□ -1.9
SMC4-220ENST00000488017 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.17□□□□□ -1.9
SMC4-220ENST00000488017 MAGEC3Q8TD91 643 aa3.17□□□□□ -1.9
SMC4-220ENST00000488017 RIPOR3Q96MK2 946 aa3.17□□□□□ -1.9
SMC4-220ENST00000488017 RTKNQ9BST9 563 aa3.17□□□□□ -1.9
SMC4-220ENST00000488017 FSD1Q9BTV5 496 aa3.17□□□□□ -1.9
SMC4-220ENST00000488017 BRD8Q9H0E9 1235 aa3.17□□□□□ -1.9
SMC4-220ENST00000488017 SEPSECSQ9HD40 501 aaKnown RBP3.17□□□□□ -1.9
SMC4-220ENST00000488017 THAP1Q9NVV9 213 aa3.17□□□□□ -1.9
SMC4-220ENST00000488017 HCFC1R1Q9NWW0 138 aa3.17□□□□□ -1.9
SMC4-220ENST00000488017 NDUFS7O75251 213 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 TFPIP10646 304 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 STX2P32856 288 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 USP8P40818 1118 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 TTC22Q5TAA0 569 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 KRBA2Q6ZNG9 492 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 NOTCH2NLQ7Z3S9 236 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 KMT5CQ86Y97 462 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 OR2C3Q8N628 320 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 NCSTNQ92542 709 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 CDCA5Q96FF9 252 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 ZNF583Q96ND8 569 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 WDR13Q9H1Z4 485 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 FKRPQ9H9S5 495 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 PCDH9Q9HC56 1237 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 NDUFAF4Q9P032 175 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 PAK5Q9P286 719 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 RALYQ9UKM9 306 aaKnown RBP3.16□□□□□ -1.9
SMC4-220ENST00000488017 DAPP1Q9UN19 280 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 CDC14AQ9UNH5 594 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 PSAT1Q9Y617 370 aa3.16□□□□□ -1.9
SMC4-220ENST00000488017 NR5A2O00482 541 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 SOCS6O14544 535 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 DVL1O14640 695 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 PLRG1O43660 514 aaKnown RBP3.15□□□□□ -1.91
SMC4-220ENST00000488017 DHX16O60231 1041 aaKnown RBP3.15□□□□□ -1.91
SMC4-220ENST00000488017 METTL18O95568 372 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 ACP5P13686 325 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 SERPINA4P29622 427 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 HNRNPH1P31943 449 aaKnown RBP3.15□□□□□ -1.91
SMC4-220ENST00000488017 PIGAP37287 484 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 MVDP53602 400 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 DVL1P1P54792 670 aaPredicted RBP3.15□□□□□ -1.91
SMC4-220ENST00000488017 BYSLQ13895 437 aaKnown RBP3.15□□□□□ -1.91
SMC4-220ENST00000488017 RPS6KA2Q15349 733 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 EFNB3Q15768 340 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 RUNDC3AQ59EK9 446 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 GFRALQ6UXV0 394 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 P2RY8Q86VZ1 359 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 FAM186BQ8IYM0 893 aa3.15□□□□□ -1.91
SMC4-220ENST00000488017 FAM71BQ8TC56 605 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms