RNA–Protein interactions for RNA: ENST00000486991.1

NR1H3-223, Transcript of nuclear receptor subfamily 1 group H member 3, human

TSL 4

Gene NR1H3, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1H3-223	ENST00000486991	TARSL2	A2RTX5	802 aa	Known RBP	13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	CBX4	O00257	560 aa		13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	GARS	P41250	739 aa	Known RBP	13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	AP1B1	Q10567	949 aa		13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	SERINC3	Q13530	473 aa		13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	KIF19	Q2TAC6	998 aa		13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	COL28A1	Q2UY09	1125 aa		13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	DARS2	Q6PI48	645 aa	Known RBP	13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	LEKR1	Q6ZMV7	388 aa		13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	ARHGAP36	Q6ZRI8	547 aa		13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	PRELID2	Q8N945	189 aa		13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	ARID1B	Q8NFD5	2236 aa	Predicted RBP	13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	SHROOM3	Q8TF72	1996 aa		13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	PTPRN2	Q92932	1015 aa		13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	OLFM3	Q96PB7	478 aa		13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	BTBD1	Q9H0C5	482 aa		13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	SP110	Q9HB58	689 aa		13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	IPO11	Q9UI26	975 aa	Known RBP	13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	HPCAL4	Q9UM19	191 aa		13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	RAX	Q9Y2V3	346 aa		13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	SNX11	Q9Y5W9	270 aa		13.26	□□□□□ -0.29
NR1H3-223	ENST00000486991	EDDM13	A0A1B0GTR0	161 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	FAM149A	A5PLN7	773 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	KDELR3	O43731	214 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	LIAS	O43766	372 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	ATP9B	O43861	1147 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	SNAP91	O60641	907 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	RBP3	P10745	1247 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	GLDC	P23378	1020 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	METAP1	P53582	386 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	XRCC4	Q13426	336 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	CCNG2	Q16589	344 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	CCDC157	Q569K6	752 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	USP30	Q70CQ3	517 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	LRRC49	Q8IUZ0	686 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	CDKL3	Q8IVW4	592 aa	Predicted RBP	13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	DCAF4L2	Q8NA75	395 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	RHBDD1	Q8TEB9	315 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	TFB1M	Q8WVM0	346 aa	Known RBP	13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	HNRNPLL	Q8WVV9	542 aa	Known RBP	13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	MAGOHB	Q96A72	148 aa	Known RBP	13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	QKI	Q96PU8	341 aa	Known RBP eCLIP	13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	LGMN	Q99538	433 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	ORAI3	Q9BRQ5	295 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	C2orf49	Q9BVC5	232 aa	Predicted RBP	13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	ACE2	Q9BYF1	805 aa	Predicted RBP	13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	BRD8	Q9H0E9	1235 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	PABPC3	Q9H361	631 aa	Known RBP	13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	CCDC86	Q9H6F5	360 aa	Known RBP	13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	C10orf88	Q9H8K7	445 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	SGK2	Q9HBY8	427 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	HOMER3	Q9NSC5	361 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	SEPT10	Q9P0V9	454 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	DNPEP	Q9ULA0	475 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	APOBEC2	Q9Y235	224 aa	Known RBP	13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	TRPM6	Q9BX84	2022 aa		13.25	□□□□□ -0.29
NR1H3-223	ENST00000486991	HACD1	B0YJ81	288 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991		J3KR12	359 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	MAFK	O60675	156 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	PRAMEF11	O60813	436 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	PHF2	O75151	1096 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	ZMPSTE24	O75844	475 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	MT-CO1	P00395	513 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	IL9R	Q01113	521 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	IL10RB	Q08334	325 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	C2orf54	Q08AI8	447 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	SLC45A4	Q5BKX6	768 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	IL27RA	Q6UWB1	636 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	LINGO4	Q6UY18	593 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	DSG4	Q86SJ6	1040 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	GLRX5	Q86SX6	157 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	CCDC13	Q8IYE1	715 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	STK40	Q8N2I9	435 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	SLC35B2	Q8TB61	432 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	BAHD1	Q8TBE0	780 aa	Predicted RBP	13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	GANC	Q8TET4	914 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	NSMCE1	Q8WV22	266 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	FAM131C	Q96AQ9	280 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	HDAC11	Q96DB2	347 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	TM9SF3	Q9HD45	589 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	VPS51	Q9UID3	782 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	SLC25A13	Q9UJS0	675 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	TPX2	Q9ULW0	747 aa	Known RBP	13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	ZNF148	Q9UQR1	794 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	HS3ST2	Q9Y278	367 aa		13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	SMG1	Q96Q15	3661 aa	Known RBP	13.24	□□□□□ -0.29
NR1H3-223	ENST00000486991	MID1	O15344	667 aa		13.23	□□□□□ -0.29
NR1H3-223	ENST00000486991	FSBP	O95073	299 aa		13.23	□□□□□ -0.29
NR1H3-223	ENST00000486991	CER1	O95813	267 aa		13.23	□□□□□ -0.29
NR1H3-223	ENST00000486991	SRC	P12931	536 aa		13.23	□□□□□ -0.29
NR1H3-223	ENST00000486991	CCNC	P24863	283 aa		13.23	□□□□□ -0.29
NR1H3-223	ENST00000486991	RBL1	P28749	1068 aa		13.23	□□□□□ -0.29
NR1H3-223	ENST00000486991	KCNJ1	P48048	391 aa		13.23	□□□□□ -0.29
NR1H3-223	ENST00000486991	CLDN6	P56747	220 aa		13.23	□□□□□ -0.29
NR1H3-223	ENST00000486991	PPID	Q08752	370 aa	Known RBP	13.23	□□□□□ -0.29
NR1H3-223	ENST00000486991	PRKD1	Q15139	912 aa	Predicted RBP	13.23	□□□□□ -0.29
NR1H3-223	ENST00000486991	TEAD4	Q15561	434 aa		13.23	□□□□□ -0.29
NR1H3-223	ENST00000486991	CST6	Q15828	149 aa		13.23	□□□□□ -0.29
NR1H3-223	ENST00000486991	SOWAHC	Q53LP3	525 aa	Predicted RBP	13.23	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms