RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 CACTIN-AS1Q8N1I8 211 aa21.77■■□□□ 1.08
USP40-215ENST00000484528 MAPK15Q8TD08 544 aa21.77■■□□□ 1.08
USP40-215ENST00000484528 ZNF653Q96CK0 615 aa21.77■■□□□ 1.08
USP40-215ENST00000484528 IL12RB2Q99665 862 aa21.77■■□□□ 1.08
USP40-215ENST00000484528 LRRC61Q9BV99 259 aa21.77■■□□□ 1.08
USP40-215ENST00000484528 C1QTNF7Q9BXJ2 289 aa21.77■■□□□ 1.08
USP40-215ENST00000484528 ABCG4Q9H172 646 aa21.77■■□□□ 1.08
USP40-215ENST00000484528 SUV39H2Q9H5I1 410 aa21.77■■□□□ 1.08
USP40-215ENST00000484528 PCDH12Q9NPG4 1184 aa21.77■■□□□ 1.08
USP40-215ENST00000484528 EVA1BQ9NVM1 165 aa21.77■■□□□ 1.08
USP40-215ENST00000484528 SPASTQ9UBP0 616 aa21.77■■□□□ 1.08
USP40-215ENST00000484528 CSNK1G3Q9Y6M4 447 aa21.77■■□□□ 1.08
USP40-215ENST00000484528 TMEM191CA6NGB0 347 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 DAPK3O43293 454 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 BUB1BO60566 1050 aaPredicted RBP21.76■■□□□ 1.07
USP40-215ENST00000484528 CSO75390 466 aaKnown RBP21.76■■□□□ 1.07
USP40-215ENST00000484528 GCATO75600 419 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 MPOP05164 745 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 MIPP30301 263 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 HTR7P34969 479 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 EIF4A3P38919 411 aaKnown RBP21.76■■□□□ 1.07
USP40-215ENST00000484528 ELP6Q0PNE2 266 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 PTK2BQ14289 1009 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 TMEM52BQ4KMG9 183 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 CFAP58Q5T655 872 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 ERMARDQ5T6L9 678 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 PPP1R2P3Q6NXS1 205 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 ARHGAP36Q6ZRI8 547 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 RFX8Q6ZV50 586 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 ZSWIM9Q86XI8 627 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 CAMK1DQ8IU85 385 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 BBC3Q96PG8 261 aaPredicted RBP21.76■■□□□ 1.07
USP40-215ENST00000484528 DEPDC7Q96QD5 511 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 BPIFA3Q9BQP9 254 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 USP29Q9HBJ7 922 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 CNOT8Q9UFF9 292 aaKnown RBP21.76■■□□□ 1.07
USP40-215ENST00000484528 BPTFQ12830 3046 aa21.76■■□□□ 1.07
USP40-215ENST00000484528 TSPAN11A1L157 253 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 ARHGAP42A6NI28 874 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 DFFAO00273 331 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 DDX3XO00571 662 aaKnown RBP eCLIP21.75■■□□□ 1.07
USP40-215ENST00000484528 RNF8O76064 485 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 FTLP02792 175 aaPredicted RBP21.75■■□□□ 1.07
USP40-215ENST00000484528 GP1BAP07359 652 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 SKILP12757 684 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 C6P13671 934 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 ERCC2P18074 760 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 ADKP55263 362 aaKnown RBP21.75■■□□□ 1.07
USP40-215ENST00000484528 YPEL5P62699 121 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 UGP2Q16851 508 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 FAXCQ5TGI0 409 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 CAVIN1Q6NZI2 390 aaKnown RBP21.75■■□□□ 1.07
USP40-215ENST00000484528 MACC1Q6ZN28 852 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 LRRC69Q6ZNQ3 347 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 NYAP1Q6ZVC0 841 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 CYP4V2Q6ZWL3 525 aaPredicted RBP21.75■■□□□ 1.07
USP40-215ENST00000484528 ARHGAP12Q8IWW6 846 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 NPWQ8N729 165 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 TSEN2Q8NCE0 465 aaKnown RBP21.75■■□□□ 1.07
USP40-215ENST00000484528 SNIP1Q8TAD8 396 aaKnown RBP21.75■■□□□ 1.07
USP40-215ENST00000484528 BTN2A2Q8WVV5 523 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 NAP1L5Q96NT1 182 aaPredicted RBP21.75■■□□□ 1.07
USP40-215ENST00000484528 SP110Q9HB58 689 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 MYO1AQ9UBC5 1043 aa21.75■■□□□ 1.07
USP40-215ENST00000484528 SMTNL1A8MU46 457 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 MUSKO15146 869 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 CASC3O15234 703 aaKnown RBP21.74■■□□□ 1.07
USP40-215ENST00000484528 PRPSAP2O60256 369 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 USP12O75317 370 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 PALMO75781 387 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 CELA2BP08218 269 aaPredicted RBP21.74■■□□□ 1.07
USP40-215ENST00000484528 TGM2P21980 687 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 ZNF165P49910 485 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 KLHL30Q0D2K2 578 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 CCDC173Q0VFZ6 552 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 LRRC14Q15048 493 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 WSCD2Q2TBF2 565 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 SRLQ86TD4 932 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 TP53INP2Q8IXH6 220 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 FGF11Q92914 225 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 CINPQ9BW66 212 aaPredicted RBP21.74■■□□□ 1.07
USP40-215ENST00000484528 SLC13A1Q9BZW2 595 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 CLPBQ9H078 707 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 DONSONQ9NYP3 566 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 SALL4Q9UJQ4 1053 aa21.74■■□□□ 1.07
USP40-215ENST00000484528 A0A1B0GTH6 734 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 A0A1W2PQC6 194 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 RIOK3O14730 519 aaKnown RBP21.73■■□□□ 1.07
USP40-215ENST00000484528 RRP8O43159 456 aaKnown RBP21.73■■□□□ 1.07
USP40-215ENST00000484528 LRCH4O75427 683 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 ANXA6P08133 673 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 TSHRP16473 764 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 ACTN2P35609 894 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 MMP12P39900 470 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 PRKCIP41743 596 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 LIG3P49916 1009 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 GABREP78334 506 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 PPARDQ03181 441 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 GRM3Q14832 879 aa21.73■■□□□ 1.07
USP40-215ENST00000484528 NR0B2Q15466 257 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms