RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 RAI2Q9Y5P3 530 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 PRUNE2Q8WUY3 3088 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 MYO10Q9HD67 2058 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 ZCWPW2A0A1B0GU75 182 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.93□□□□□ -0.34
VPS13D-205ENST00000473099 CRTAMO95727 393 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 MT-CO1P00395 513 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 C1QAP02745 245 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 FOSL2P15408 326 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 TPH1P17752 444 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 KRT15P19012 456 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 CHRNA4P43681 627 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 GRIA4P48058 902 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 PPP2R2AP63151 447 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 BCL2L1Q07817 233 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 DNAJC3Q13217 504 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 SEPT6Q14141 434 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 ASTLQ6HA08 431 aaPredicted RBP12.93□□□□□ -0.34
VPS13D-205ENST00000473099 GRAMD4Q6IC98 578 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 TANGO2Q6ICL3 276 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 C22orf39Q6P5X5 142 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 VITQ6UXI7 678 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 ADIPOR2Q86V24 386 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.93□□□□□ -0.34
VPS13D-205ENST00000473099 ETFBKMTQ8IXQ9 262 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 LMNTD2Q8IXW0 634 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 KDM1BQ8NB78 822 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 SMRP1Q8NCR6 262 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 CALML6Q8TD86 181 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 MYLIPQ8WY64 445 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 ALKBH8Q96BT7 664 aaKnown RBP12.93□□□□□ -0.34
VPS13D-205ENST00000473099 EXOC2Q96KP1 924 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 MYADMQ96S97 322 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 CPNE1Q99829 537 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 TTYH1Q9H313 450 aaPredicted RBP12.93□□□□□ -0.34
VPS13D-205ENST00000473099 PPANQ9NQ55 473 aaKnown RBP12.93□□□□□ -0.34
VPS13D-205ENST00000473099 CHRAC1Q9NRG0 131 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 DEC1Q9P2X7 70 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 TBK1Q9UHD2 729 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 ACTL7AQ9Y615 435 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 CUL9Q8IWT3 2517 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 CKAP5Q14008 2032 aa12.93□□□□□ -0.34
VPS13D-205ENST00000473099 SMAD6O43541 496 aaKnown RBP12.92□□□□□ -0.34
VPS13D-205ENST00000473099 TULP3O75386 442 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 SNRPAP09012 282 aaKnown RBP12.92□□□□□ -0.34
VPS13D-205ENST00000473099 CISD3P0C7P0 127 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 SERPINA4P29622 427 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 RECQLP46063 649 aaPredicted RBP12.92□□□□□ -0.34
VPS13D-205ENST00000473099 MSLNQ13421 630 aaPredicted RBP12.92□□□□□ -0.34
VPS13D-205ENST00000473099 RUNX3Q13761 415 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 IHHQ14623 411 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 GRIN2CQ14957 1233 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 EFTUD2Q15029 972 aaKnown RBP eCLIP12.92□□□□□ -0.34
VPS13D-205ENST00000473099 UGP2Q16851 508 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 SKIDA1Q1XH10 827 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 TSTD2Q5T7W7 516 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 ARMC12Q5T9G4 340 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 TRMT10BQ6PF06 316 aaKnown RBP12.92□□□□□ -0.34
VPS13D-205ENST00000473099 EP400NLQ6ZTU2 488 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 NUDT18Q6ZVK8 323 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 KDELC2Q7Z4H8 507 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 TRABD2AQ86V40 505 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 KCNMB4Q86W47 210 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 RASSF3Q86WH2 238 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 NDUFAF2Q8N183 169 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 MICALL1Q8N3F8 863 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 MAFAQ8NHW3 353 aaPredicted RBP12.92□□□□□ -0.34
VPS13D-205ENST00000473099 STYXQ8WUJ0 223 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 ZBTB9Q96C00 473 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 RMDN1Q96DB5 314 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 MFSD3Q96ES6 412 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 ASIC4Q96FT7 647 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 FCRL3Q96P31 734 aaPredicted RBP12.92□□□□□ -0.34
VPS13D-205ENST00000473099 C19orf43Q9BQ61 176 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 FAM167BQ9BTA0 163 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 CPEB1Q9BZB8 566 aaKnown RBP12.92□□□□□ -0.34
VPS13D-205ENST00000473099 TRABDQ9H4I3 376 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 EBF3Q9H4W6 596 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 POMKQ9H5K3 350 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 SSU72Q9NP77 194 aaKnown RBP12.92□□□□□ -0.34
VPS13D-205ENST00000473099 TREX1Q9NSU2 369 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.92□□□□□ -0.34
VPS13D-205ENST00000473099 EPS15L1Q9UBC2 864 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 CTNNAL1Q9UBT7 734 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 CD207Q9UJ71 328 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 ERVW-1Q9UQF0 538 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 CHKBQ9Y259 395 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 PIKFYVEQ9Y2I7 2098 aa12.92□□□□□ -0.34
VPS13D-205ENST00000473099 TTC24A2A3L6 582 aaPredicted RBP12.91□□□□□ -0.34
VPS13D-205ENST00000473099 MROH6A6NGR9 719 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 C2orf81A6NN90 581 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 ANKRD66B4E2M5 251 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 K7ERQ8 282 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 SLC7A4O43246 635 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 HTRA2O43464 458 aaPredicted RBP12.91□□□□□ -0.34
VPS13D-205ENST00000473099 FZD6O60353 706 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 FAM155BO75949 473 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 POP4O95707 220 aaKnown RBP12.91□□□□□ -0.34
VPS13D-205ENST00000473099 DLDP09622 509 aaKnown RBP12.91□□□□□ -0.34
VPS13D-205ENST00000473099 ARSAP15289 507 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms