RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 PARGQ86W56 976 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 PSTKQ8IV42 348 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 TSEN2Q8NCE0 465 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 ASB12Q8WXK4 309 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 HSPH1Q92598 858 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 IFT43Q96FT9 208 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 BTBD6Q96KE9 485 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 CINPQ9BW66 212 aaPredicted RBP15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 CPEB1Q9BZB8 566 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 THAP2Q9H0W7 228 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 SUV39H2Q9H5I1 410 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 ZWILCHQ9H900 591 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 CWC15Q9P013 229 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 IFNKQ9P0W0 207 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 DKK3Q9UBP4 350 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 COQ6Q9Y2Z9 468 aa15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 BZW2Q9Y6E2 419 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-205ENST00000472524 SPTY2D1-AS1A0A0U1RR47 76 aa15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 H3BM21 787 aa15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 H3BRJ5 948 aa15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 NEBLO76041 1014 aa15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 ALPPL2P10696 532 aa15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 ACP1P24666 158 aa15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 PCK1P35558 622 aa15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 EIF2S3P41091 472 aaKnown RBP15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 ZBED6P86452 979 aa15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 DPYSQ14117 519 aa15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 GRM3Q14832 879 aa15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 NFKBIBQ15653 356 aa15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 AFMIDQ63HM1 303 aa15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 TP53INP2Q8IXH6 220 aa15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 PAF1Q8N7H5 531 aa15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 SYN2Q92777 582 aaPredicted RBP15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 C1QTNF7Q9BXJ2 289 aa15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 NRSN2Q9GZP1 204 aa15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 CAPN11Q9UMQ6 739 aa15.87■□□□□ 0.13
CCDC88B-205ENST00000472524 BPTFQ12830 3046 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 BUB1BO60566 1050 aaPredicted RBP15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 CSF2P04141 144 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 GYPCP04921 128 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 PRKCGP05129 697 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 GIMD1P0DJR0 217 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 MYF5P13349 255 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 NME1P15531 152 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 JUNDP17535 347 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 ARL4AP40617 200 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 ZNF135P52742 658 aaPredicted RBP15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 THOP1P52888 689 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 PFN3P60673 137 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 INSM1Q01101 510 aaPredicted RBP15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 ELP6Q0PNE2 266 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 ILKQ13418 452 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 RTP5Q14D33 572 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 ZSCAN23Q3MJ62 389 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 SRLQ86TD4 932 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 CAMK1DQ8IU85 385 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 TP53I13Q8NBR0 393 aaPredicted RBP15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 ZNF548Q8NEK5 533 aaPredicted RBP15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 CENPTQ96BT3 561 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 NUP85Q9BW27 656 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 PCDH12Q9NPG4 1184 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 MBNL1Q9NR56 388 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 NLGN3Q9NZ94 848 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 KLF15Q9UIH9 416 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 ANAPC7Q9UJX3 599 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 LUC7L2Q9Y383 392 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 RAI2Q9Y5P3 530 aa15.86■□□□□ 0.13
CCDC88B-205ENST00000472524 A0A087X0T9 212 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 TSPAN11A1L157 253 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 NEMP2A6NFY4 417 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 EIF4E1BA6NMX2 242 aaKnown RBP15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 K7ESM1 405 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 SCAMP1O15126 338 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 PRB1P04280 392 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 FAM228BP0C875 321 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 C6P13671 934 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 PTMSP20962 102 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 AMPD1P23109 780 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 SERPINA4P29622 427 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 HCAR3P49019 387 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 SUOXP51687 545 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 IL10RBQ08334 325 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 EIF2B5Q13144 721 aaKnown RBP15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 PIGHQ14442 188 aaPredicted RBP15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 IRF4Q15306 451 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 DPYSL2Q16555 572 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 UGP2Q16851 508 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 TMEM52BQ4KMG9 183 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 TXNRD3NBQ6F5E7 133 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 ERAP2Q6P179 960 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 ZSWIM9Q86XI8 627 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 RBFAQ8N0V3 343 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 LMX1AQ8TE12 382 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 RFFLQ8WZ73 363 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 IQCDQ96DY2 449 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 APOLD1Q96LR9 279 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 ZNF641Q96N77 438 aaPredicted RBP15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 TUBGCP5Q96RT8 1024 aa15.85■□□□□ 0.13
CCDC88B-205ENST00000472524 ATP13A3Q9H7F0 1226 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms