RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 COL6A2P12110 1019 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 ELF1P32519 619 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 CSRP3P50461 194 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 SLC5A3P53794 718 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 CERCAMQ5T4B2 595 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 ASTLQ6HA08 431 aaPredicted RBP14.96□□□□□ -0.01
USP4-203ENST00000415188 FSTL4Q6MZW2 842 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 RWDD4Q6NW29 188 aaKnown RBP14.96□□□□□ -0.01
USP4-203ENST00000415188 MSANTD2Q6P1R3 559 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 PKN3Q6P5Z2 889 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 POTEHQ6S545 545 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 CES3Q6UWW8 571 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 ZCCHC23Q6ZST2 131 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 LRRTM3Q86VH5 581 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 C10orf107Q8IVU9 208 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 CNTN4Q8IWV2 1026 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 ARHGAP12Q8IWW6 846 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.96□□□□□ -0.01
USP4-203ENST00000415188 DCP1BQ8IZD4 617 aaKnown RBP14.96□□□□□ -0.01
USP4-203ENST00000415188 SIX5Q8N196 739 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 SLC44A3Q8N4M1 653 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 FUBP3Q96I24 572 aaKnown RBP eCLIP14.96□□□□□ -0.01
USP4-203ENST00000415188 VPS39Q96JC1 886 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 SERPINB11Q96P15 392 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 GPR22Q99680 433 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 TBL1YQ9BQ87 522 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 C20orf27Q9GZN8 174 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 STOML1Q9UBI4 398 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 SNX10Q9Y5X0 201 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 BACE2Q9Y5Z0 518 aa14.96□□□□□ -0.01
USP4-203ENST00000415188 CACNA1HO95180 2353 aa14.96□□□□□ -0.02
USP4-203ENST00000415188 B2RBV5 119 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 H0Y858 1186 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 GALR2O43603 387 aaPredicted RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 ATP9BO43861 1147 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 SIN3BO75182 1162 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 PAGE1O75459 146 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 LUC7L3O95232 432 aaKnown RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 TOP3BO95985 862 aaKnown RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 GM2AP17900 193 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 KCNA4P22459 653 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 HOXA9P31269 272 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 PGM1P36871 562 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 IRX4P78413 519 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 YWHAHQ04917 246 aaPredicted RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 TUBB3Q13509 450 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 NFE2Q16621 373 aaPredicted RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 HSP90AA5PQ58FG0 334 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 RABGAP1LQ5R372 815 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 VARS2Q5ST30 1063 aaKnown RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 C6orf163Q5TEZ5 329 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 ANKS3Q6ZW76 656 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 TREML1Q86YW5 311 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 CNTD1Q8N815 330 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 RTL3Q8N8U3 475 aaKnown RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 PPHLN1Q8NEY8 458 aaKnown RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 C8orf48Q96LL4 319 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 C1orf74Q96LT6 269 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 ZNF778Q96MU6 729 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 SORT1Q99523 831 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 ZNF395Q9H8N7 513 aaPredicted RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 BATF3Q9NR55 127 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 HCFC1R1Q9NWW0 138 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 MARCOQ9UEW3 520 aaPredicted RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 KCNU1A8MYU2 1149 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 ANHXE9PGG2 379 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 DFFAO00273 331 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 PI15O43692 258 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 ITM2AO43736 263 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 XYLBO75191 536 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 CIB2O75838 187 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 ENO1P06733 434 aaKnown RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 KITP10721 976 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 PRDX6P30041 224 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 ARPP19P56211 112 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 ILF2Q12905 390 aaKnown RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 HTR4Q13639 388 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 ZRSR2Q15696 482 aaKnown RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 PPM1JQ5JR12 505 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 ACBD5Q5T8D3 534 aaPredicted RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 NET1Q7Z628 596 aaPredicted RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 CMC1Q7Z7K0 106 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 MAB21L3Q8N8X9 362 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 GABPB2Q8TAK5 448 aaPredicted RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 ITFG1Q8TB96 612 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 MFSD3Q96ES6 412 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 CELF6Q96J87 481 aaKnown RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 RPP25Q9BUL9 199 aaKnown RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 ZCWPW1Q9H0M4 648 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 IARS2Q9NSE4 1012 aaKnown RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 ARMCX1Q9P291 453 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 NKX1-2Q9UD57 310 aaPredicted RBP14.95□□□□□ -0.02
USP4-203ENST00000415188 SCML2Q9UQR0 700 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 LRRC42Q9Y546 428 aa14.95□□□□□ -0.02
USP4-203ENST00000415188 KRBA1A5PL33 1030 aa14.94□□□□□ -0.02
USP4-203ENST00000415188 TBC1D4O60343 1298 aa14.94□□□□□ -0.02
USP4-203ENST00000415188 MAFKO60675 156 aa14.94□□□□□ -0.02
USP4-203ENST00000415188 TRIM13O60858 407 aa14.94□□□□□ -0.02
USP4-203ENST00000415188 LYPLA1O75608 230 aaPredicted RBP14.94□□□□□ -0.02
USP4-203ENST00000415188 TM7SF2O76062 418 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms