RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 SPO11Q9Y5K1 396 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 SNX14Q9Y5W7 946 aa8.19□□□□□ -1.1
LIMS1-203ENST00000393310 TRABD2BA6NFA1 517 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 F8VP50 259 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 PRPF4O43172 522 aaKnown RBP eCLIP8.18□□□□□ -1.1
LIMS1-203ENST00000393310 LATS1O95835 1130 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 SLC1A1P43005 524 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 TDRD12Q587J7 1177 aaKnown RBP8.18□□□□□ -1.1
LIMS1-203ENST00000393310 KRT39Q6A163 491 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 GPBAR1Q8TDU6 330 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 CYFIP2Q96F07 1278 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 MOGAT1Q96PD6 335 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 HAUS4Q9H6D7 363 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 EP300Q09472 2414 aaPredicted RBP8.18□□□□□ -1.1
LIMS1-203ENST00000393310 IGKV6D-21A0A0A0MT36 114 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 TXNDC9O14530 226 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 HGSO14964 777 aaPredicted RBP8.18□□□□□ -1.1
LIMS1-203ENST00000393310 KRT86O43790 486 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 CCR1P32246 355 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 TNFSF9P41273 254 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 SUOXP51687 545 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 PPARDQ03181 441 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 DSC1Q08554 894 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 PLCL1Q15111 1095 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 JADE1Q6IE81 842 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 BZW1Q7L1Q6 419 aaKnown RBP8.18□□□□□ -1.1
LIMS1-203ENST00000393310 KRT77Q7Z794 578 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 BPHLQ86WA6 291 aaPredicted RBP8.18□□□□□ -1.1
LIMS1-203ENST00000393310 ICA1LQ8NDH6 482 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 LILRB1Q8NHL6 650 aaPredicted RBP8.18□□□□□ -1.1
LIMS1-203ENST00000393310 SPATA20Q8TB22 786 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 ZNF285Q96NJ3 590 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 MTMR12Q9C0I1 747 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 TRPV4Q9HBA0 871 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 CHRAC1Q9NRG0 131 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 INTS13Q9NVM9 706 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 IL20Q9NYY1 176 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 GTSE1Q9NYZ3 720 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 TELO2Q9Y4R8 837 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 CFAP73A6NFT4 308 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 MYO1FO00160 1098 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 DAB1O75553 588 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 DLDP09622 509 aaKnown RBP8.18□□□□□ -1.1
LIMS1-203ENST00000393310 CPA3P15088 417 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 ATP6V1B1P15313 513 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 TCP1P17987 556 aaKnown RBP8.18□□□□□ -1.1
LIMS1-203ENST00000393310 RUNDC3AQ59EK9 446 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.18□□□□□ -1.1
LIMS1-203ENST00000393310 RAD54LQ92698 747 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 HDAC2Q92769 488 aaKnown RBP8.18□□□□□ -1.1
LIMS1-203ENST00000393310 COL26A1Q96A83 441 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 RADILQ96JH8 1075 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 TBATAQ96M53 351 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 NFE2L3Q9Y4A8 694 aa8.18□□□□□ -1.1
LIMS1-203ENST00000393310 TBL1XO60907 577 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 RASSF9O75901 435 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 IFNA16P05015 189 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 MAPK3P27361 379 aaPredicted RBP8.17□□□□□ -1.1
LIMS1-203ENST00000393310 EVI2BP34910 448 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 MAPKAPK2P49137 400 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 RNASE9P60153 205 aaKnown RBP8.17□□□□□ -1.1
LIMS1-203ENST00000393310 RAPSNQ13702 412 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 PRPSAP1Q14558 356 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 TSGA10IPQ3SY00 556 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 FAM35AQ86V20 835 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 SFR1Q86XK3 245 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 BEND7Q8N7W2 519 aaPredicted RBP8.17□□□□□ -1.1
LIMS1-203ENST00000393310 GPT2Q8TD30 523 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 CIDECQ96AQ7 238 aaPredicted RBP8.17□□□□□ -1.1
LIMS1-203ENST00000393310 SDCCAG3Q96C92 435 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 ACAT2Q9BWD1 397 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 PTPRHQ9HD43 1115 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 SLC40A1Q9NP59 571 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 TXLNGQ9NUQ3 528 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 SPTLC3Q9NUV7 552 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 DDX18Q9NVP1 670 aaKnown RBP8.17□□□□□ -1.1
LIMS1-203ENST00000393310 PTBP2Q9UKA9 531 aaKnown RBP8.17□□□□□ -1.1
LIMS1-203ENST00000393310 M0QYV0 167 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 OR5F1O95221 314 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 TYRP14679 529 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 SLC9A1P19634 815 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 CASRP41180 1078 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 ASMTP46597 345 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 ESRRGP62508 458 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 PPP2R2AP63151 447 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 GOLGA7BQ2TAP0 167 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 ARHGAP24Q8N264 748 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 DNAAF3Q8N9W5 541 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 OR8K1Q8NGG5 319 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 JPH3Q8WXH2 748 aaPredicted RBP8.17□□□□□ -1.1
LIMS1-203ENST00000393310 TRMT2BQ96GJ1 504 aaKnown RBP8.17□□□□□ -1.1
LIMS1-203ENST00000393310 KLHL31Q9H511 634 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 ACSS2Q9NR19 701 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 CNTN3Q9P232 1028 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 A0A0G2JPF8 293 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 HNRNPCL3B7ZW38 293 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 FANCGO15287 622 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 BUB1O43683 1085 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 HNRNPCL4P0DMR1 293 aa8.17□□□□□ -1.1
LIMS1-203ENST00000393310 NEK3P51956 506 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms