RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 IL12RB2Q99665 862 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 SEMA4AQ9H3S1 761 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 TBC1D17Q9HA65 648 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 SYBUQ9NX95 663 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.29□□□□□ -0.92
USP4-202ENST00000351842 HCN2Q9UL51 889 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 SPAG17Q6Q759 2223 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 TCRBV21S2A2A0A5A6 115 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 FOXO6A8MYZ6 492 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 POC1B-GALNT4F8VUJ3 575 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 MID1O15344 667 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 MTSS1O43312 755 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 GCATO75600 419 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 CTSLP07711 333 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 IVDP26440 423 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 PGGT1BP53609 377 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 RAD51Q06609 339 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 CDK18Q07002 472 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 MYLK3Q32MK0 819 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 CARD16Q5EG05 197 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 RNASEH2BQ5TBB1 312 aaKnown RBP9.29□□□□□ -0.92
USP4-202ENST00000351842 ZNF852Q6ZMS4 543 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 RFLNAQ6ZTI6 216 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 SRLQ86TD4 932 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 TMPRSS6Q8IU80 811 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 IGDCC3Q8IVU1 814 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 IL17RCQ8NAC3 791 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 FBXO36Q8NEA4 188 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 PYROXD1Q8WU10 500 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 SNX19Q92543 992 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 ZNF669Q96BR6 464 aaPredicted RBP9.29□□□□□ -0.92
USP4-202ENST00000351842 MFSD3Q96ES6 412 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 TSGA13Q96PP4 275 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 TBL1YQ9BQ87 522 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 GPR63Q9BZJ6 419 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 FAM96AQ9H5X1 160 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 OBP2AQ9NY56 170 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 SLC2A6Q9UGQ3 507 aa9.29□□□□□ -0.92
USP4-202ENST00000351842 C1orf232A0A0U1RR37 186 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 HNRNPLP14866 589 aaKnown RBP eCLIP9.28□□□□□ -0.92
USP4-202ENST00000351842 C5orf22Q49AR2 442 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 TMEM196Q5HYL7 178 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 SIRPB2Q5JXA9 342 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 ZDHHC24Q6UX98 284 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 ZSWIM9Q86XI8 627 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 ARRDC2Q8TBH0 407 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 PIP4K2CQ8TBX8 421 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 PRCCQ92733 491 aaPredicted RBP9.28□□□□□ -0.92
USP4-202ENST00000351842 MRGPRX2Q96LB1 330 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 GORASP1Q9BQQ3 440 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 SLC25A51Q9H1U9 297 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 ATP13A3Q9H7F0 1226 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 MARK1Q9P0L2 795 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 TRHDEQ9UKU6 1024 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 HELZP42694 1942 aaKnown RBP9.28□□□□□ -0.92
USP4-202ENST00000351842 ANKRD12Q6UB98 2062 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 PI15O43692 258 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 ZNF821O75541 412 aaPredicted RBP9.28□□□□□ -0.92
USP4-202ENST00000351842 ANXA9O76027 345 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 PRSS56P0CW18 603 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 COL9A1P20849 921 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 SERPINA4P29622 427 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 WDR93Q6P2C0 686 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 GDAP1Q8TB36 358 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 EXOC4Q96A65 974 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 MRGPRX3Q96LB0 322 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 OMDQ99983 421 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 SERGEFQ9UGK8 458 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 RPS6KL1Q9Y6S9 549 aa9.28□□□□□ -0.92
USP4-202ENST00000351842 ZNF487B1APH4 448 aa9.27□□□□□ -0.92
USP4-202ENST00000351842 MMP2P08253 660 aa9.27□□□□□ -0.92
USP4-202ENST00000351842 DGKEP52429 567 aa9.27□□□□□ -0.92
USP4-202ENST00000351842 IFI35P80217 286 aaPredicted RBP9.27□□□□□ -0.92
USP4-202ENST00000351842 SULT2A1Q06520 285 aa9.27□□□□□ -0.92
USP4-202ENST00000351842 BEND6Q5SZJ8 279 aaPredicted RBP9.27□□□□□ -0.92
USP4-202ENST00000351842 DRICH1Q6PGQ1 229 aaPredicted RBP9.27□□□□□ -0.92
USP4-202ENST00000351842 TMEM92Q6UXU6 159 aa9.27□□□□□ -0.92
USP4-202ENST00000351842 CCNI2Q6ZMN8 369 aaPredicted RBP9.27□□□□□ -0.92
USP4-202ENST00000351842 ARMCX6Q7L4S7 300 aa9.27□□□□□ -0.92
USP4-202ENST00000351842 PTAR1Q7Z6K3 402 aaPredicted RBP9.27□□□□□ -0.92
USP4-202ENST00000351842 RALGPS2Q86X27 583 aaPredicted RBP9.27□□□□□ -0.92
USP4-202ENST00000351842 VSIG1Q86XK7 387 aa9.27□□□□□ -0.92
USP4-202ENST00000351842 OR13C4Q8NGS5 318 aa9.27□□□□□ -0.92
USP4-202ENST00000351842 OR14C36Q8NHC7 312 aa9.27□□□□□ -0.92
USP4-202ENST00000351842 MYO19Q96H55 970 aa9.27□□□□□ -0.92
USP4-202ENST00000351842 HEPHQ9BQS7 1158 aa9.27□□□□□ -0.92
USP4-202ENST00000351842 FAM114A2Q9NRY5 505 aa9.27□□□□□ -0.92
USP4-202ENST00000351842 ZC3H7BQ9UGR2 993 aaKnown RBP9.27□□□□□ -0.92
USP4-202ENST00000351842 SPO11Q9Y5K1 396 aa9.27□□□□□ -0.92
USP4-202ENST00000351842 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.27□□□□□ -0.93
USP4-202ENST00000351842 LOC730098B7Z3J9 87 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 CLDN7O95471 211 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 GEMP55040 296 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 ARL4CP56559 192 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 IFFO1Q0D2I5 559 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 EFTUD2Q15029 972 aaKnown RBP eCLIP9.27□□□□□ -0.93
USP4-202ENST00000351842 CNGA3Q16281 694 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 ACBD5Q5T8D3 534 aaPredicted RBP9.27□□□□□ -0.93
USP4-202ENST00000351842 LYSMD3Q7Z3D4 306 aa9.27□□□□□ -0.93
USP4-202ENST00000351842 GLT6D1Q7Z4J2 308 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms