RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 ATP13A3Q9H7F0 1226 aa20.35■□□□□ 0.85
SYNE2-201ENST00000341472 PCDH12Q9NPG4 1184 aa20.35■□□□□ 0.85
SYNE2-201ENST00000341472 SEPT3Q9UH03 358 aa20.35■□□□□ 0.85
SYNE2-201ENST00000341472 TAF4O00268 1085 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 SCAMP1O15126 338 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 SERPINA4P29622 427 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 HNRNPH3P31942 346 aaKnown RBP20.34■□□□□ 0.85
SYNE2-201ENST00000341472 RGRP47804 291 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 RENBPP51606 427 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 THOP1P52888 689 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 YPEL5P62699 121 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 DAB2P98082 770 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 PTK2BQ14289 1009 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 TXNRD3NBQ6F5E7 133 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 PARGQ86W56 976 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 TP53INP2Q8IXH6 220 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 PAF1Q8N7H5 531 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 PDCD7Q8N8D1 485 aaKnown RBP20.34■□□□□ 0.85
SYNE2-201ENST00000341472 OR8K1Q8NGG5 319 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 ZNF599Q96NL3 588 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 CAAP1Q9H8G2 361 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 PCDH18Q9HCL0 1135 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 ETNK2Q9NVF9 386 aa20.34■□□□□ 0.85
SYNE2-201ENST00000341472 H3BM21 787 aa20.33■□□□□ 0.85
SYNE2-201ENST00000341472 RIOK3O14730 519 aaKnown RBP20.33■□□□□ 0.85
SYNE2-201ENST00000341472 NME1P15531 152 aaKnown RBP20.33■□□□□ 0.85
SYNE2-201ENST00000341472 JUNDP17535 347 aa20.33■□□□□ 0.85
SYNE2-201ENST00000341472 ACP1P24666 158 aa20.33■□□□□ 0.85
SYNE2-201ENST00000341472 SCNN1BP51168 640 aa20.33■□□□□ 0.85
SYNE2-201ENST00000341472 POLR2LP62875 67 aaKnown RBP20.33■□□□□ 0.85
SYNE2-201ENST00000341472 E2F1Q01094 437 aa20.33■□□□□ 0.85
SYNE2-201ENST00000341472 BCL2L1Q07817 233 aa20.33■□□□□ 0.85
SYNE2-201ENST00000341472 KRT81Q14533 505 aa20.33■□□□□ 0.85
SYNE2-201ENST00000341472 LBRQ14739 615 aaKnown RBP20.33■□□□□ 0.85
SYNE2-201ENST00000341472 HADHQ16836 314 aaKnown RBP20.33■□□□□ 0.85
SYNE2-201ENST00000341472 TMCO4Q5TGY1 634 aa20.33■□□□□ 0.85
SYNE2-201ENST00000341472 PSKH2Q96QS6 385 aa20.33■□□□□ 0.85
SYNE2-201ENST00000341472 DUSP23Q9BVJ7 150 aa20.33■□□□□ 0.85
SYNE2-201ENST00000341472 MBNL1Q9NR56 388 aaKnown RBP20.33■□□□□ 0.85
SYNE2-201ENST00000341472 ZNHIT6Q9NWK9 470 aaKnown RBP20.33■□□□□ 0.85
SYNE2-201ENST00000341472 ATP8A1Q9Y2Q0 1164 aa20.33■□□□□ 0.85
SYNE2-201ENST00000341472 TOR1BO14657 336 aa20.32■□□□□ 0.84
SYNE2-201ENST00000341472 LZTS3O60299 673 aaPredicted RBP20.32■□□□□ 0.84
SYNE2-201ENST00000341472 GIMD1P0DJR0 217 aa20.32■□□□□ 0.84
SYNE2-201ENST00000341472 IGFALSP35858 605 aa20.32■□□□□ 0.84
SYNE2-201ENST00000341472 LIG3P49916 1009 aa20.32■□□□□ 0.84
SYNE2-201ENST00000341472 SLC25A11Q02978 314 aaKnown RBP20.32■□□□□ 0.84
SYNE2-201ENST00000341472 SLC10A7Q0GE19 358 aa20.32■□□□□ 0.84
SYNE2-201ENST00000341472 EIF2B5Q13144 721 aaKnown RBP20.32■□□□□ 0.84
SYNE2-201ENST00000341472 CAMK2BQ13554 666 aa20.32■□□□□ 0.84
SYNE2-201ENST00000341472 LRRC14Q15048 493 aa20.32■□□□□ 0.84
SYNE2-201ENST00000341472 TSR1Q2NL82 804 aaKnown RBP20.32■□□□□ 0.84
SYNE2-201ENST00000341472 TPRG1LQ5T0D9 272 aa20.32■□□□□ 0.84
SYNE2-201ENST00000341472 SPECC1LQ69YQ0 1117 aa20.32■□□□□ 0.84
SYNE2-201ENST00000341472 KDM7AQ6ZMT4 941 aa20.32■□□□□ 0.84
SYNE2-201ENST00000341472 PROSER1Q86XN7 944 aa20.32■□□□□ 0.84
SYNE2-201ENST00000341472 TP53I13Q8NBR0 393 aaPredicted RBP20.32■□□□□ 0.84
SYNE2-201ENST00000341472 BTN2A2Q8WVV5 523 aa20.32■□□□□ 0.84
SYNE2-201ENST00000341472 TSPY26PQ9H489 355 aa20.32■□□□□ 0.84
SYNE2-201ENST00000341472 NLGN3Q9NZ94 848 aa20.32■□□□□ 0.84
SYNE2-201ENST00000341472 CTTNBP2NLQ9P2B4 639 aa20.32■□□□□ 0.84
SYNE2-201ENST00000341472 KLF15Q9UIH9 416 aa20.32■□□□□ 0.84
SYNE2-201ENST00000341472 CSNK1G3Q9Y6M4 447 aa20.32■□□□□ 0.84
SYNE2-201ENST00000341472 GOLGA4Q13439 2230 aaKnown RBP20.32■□□□□ 0.84
SYNE2-201ENST00000341472 CFAP69A5D8W1 941 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 K7ESM1 405 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 MUSKO15146 869 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 HNF1BP35680 557 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 CDH6P55285 790 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 AP1S1P61966 158 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 CYP4F3Q08477 520 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 TARDBPQ13148 414 aaKnown RBP eCLIP20.31■□□□□ 0.84
SYNE2-201ENST00000341472 TRIM14Q14142 442 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 WSCD2Q2TBF2 565 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 ZSWIM9Q86XI8 627 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 BBS5Q8N3I7 341 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 FAM181AQ8N9Y4 354 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 ZNF548Q8NEK5 533 aaPredicted RBP20.31■□□□□ 0.84
SYNE2-201ENST00000341472 ZNF564Q8TBZ8 553 aaPredicted RBP20.31■□□□□ 0.84
SYNE2-201ENST00000341472 MDM1Q8TC05 714 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 LMX1AQ8TE12 382 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 NSMCE1Q8WV22 266 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 EVA1BQ9NVM1 165 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 SPASTQ9UBP0 616 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 NENFQ9UMX5 172 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 COQ6Q9Y2Z9 468 aa20.31■□□□□ 0.84
SYNE2-201ENST00000341472 ASPMQ8IZT6 3477 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.3■□□□□ 0.84
SYNE2-201ENST00000341472 TMEM110-MUSTN1A8MSY1 372 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 NEBLO76041 1014 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 PRKCGP05129 697 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 H2AFZP0C0S5 128 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 CKMT1AP12532 417 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 C6P13671 934 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 IL4RP24394 825 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 SERPINB6P35237 376 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 HSPA9P38646 679 aaKnown RBP20.3■□□□□ 0.84
SYNE2-201ENST00000341472 PEX5P50542 639 aa20.3■□□□□ 0.84
SYNE2-201ENST00000341472 DUSP3P51452 185 aaPredicted RBP20.3■□□□□ 0.84
SYNE2-201ENST00000341472 CLDN6P56747 220 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms