RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 ARMC12Q5T9G4 340 aa22.35■■□□□ 1.17
SDC3-202ENST00000339394 BRAT1Q6PJG6 821 aa22.35■■□□□ 1.17
SDC3-202ENST00000339394 SYDE1Q6ZW31 735 aaPredicted RBP22.35■■□□□ 1.17
SDC3-202ENST00000339394 PARS2Q7L3T8 475 aaKnown RBP22.35■■□□□ 1.17
SDC3-202ENST00000339394 IPMKQ8NFU5 416 aa22.35■■□□□ 1.17
SDC3-202ENST00000339394 SPOCK2Q92563 424 aa22.35■■□□□ 1.17
SDC3-202ENST00000339394 OMDQ99983 421 aa22.35■■□□□ 1.17
SDC3-202ENST00000339394 HDAC8Q9BY41 377 aa22.35■■□□□ 1.17
SDC3-202ENST00000339394 ARIH1Q9Y4X5 557 aaPredicted RBP22.35■■□□□ 1.17
SDC3-202ENST00000339394 TSPAN11A1L157 253 aa22.34■■□□□ 1.17
SDC3-202ENST00000339394 RAD51CO43502 376 aa22.34■■□□□ 1.17
SDC3-202ENST00000339394 P2RY2P41231 377 aa22.34■■□□□ 1.17
SDC3-202ENST00000339394 BASP1P80723 227 aaKnown RBP22.34■■□□□ 1.17
SDC3-202ENST00000339394 CDK18Q07002 472 aa22.34■■□□□ 1.17
SDC3-202ENST00000339394 SEMA5AQ13591 1074 aa22.34■■□□□ 1.17
SDC3-202ENST00000339394 PTK6Q13882 451 aa22.34■■□□□ 1.17
SDC3-202ENST00000339394 SYCP2LQ5T4T6 812 aa22.34■■□□□ 1.17
SDC3-202ENST00000339394 KCTD11Q693B1 232 aa22.34■■□□□ 1.17
SDC3-202ENST00000339394 ERN2Q76MJ5 926 aaKnown RBP22.34■■□□□ 1.17
SDC3-202ENST00000339394 TTC7BQ86TV6 843 aa22.34■■□□□ 1.17
SDC3-202ENST00000339394 PAF1Q8N7H5 531 aa22.34■■□□□ 1.17
SDC3-202ENST00000339394 PDCD7Q8N8D1 485 aaKnown RBP22.34■■□□□ 1.17
SDC3-202ENST00000339394 NOA1Q8NC60 698 aaKnown RBP22.34■■□□□ 1.17
SDC3-202ENST00000339394 GANCQ8TET4 914 aa22.34■■□□□ 1.17
SDC3-202ENST00000339394 TRIB3Q96RU7 358 aa22.34■■□□□ 1.17
SDC3-202ENST00000339394 NEUROG2Q9H2A3 272 aa22.34■■□□□ 1.17
SDC3-202ENST00000339394 USP36Q9P275 1121 aaKnown RBP22.34■■□□□ 1.17
SDC3-202ENST00000339394 USP34Q70CQ2 3546 aa22.34■■□□□ 1.17
SDC3-202ENST00000339394 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP22.33■■□□□ 1.17
SDC3-202ENST00000339394 LOC285095A0A1B0GVY8 99 aa22.33■■□□□ 1.17
SDC3-202ENST00000339394 GOLGA6CA6NDK9 693 aa22.33■■□□□ 1.17
SDC3-202ENST00000339394 GOLGA6BA6NDN3 693 aa22.33■■□□□ 1.17
SDC3-202ENST00000339394 GOLGA6DP0CG33 693 aa22.33■■□□□ 1.17
SDC3-202ENST00000339394 TIMP2P16035 220 aa22.33■■□□□ 1.17
SDC3-202ENST00000339394 POLR2LP62875 67 aaKnown RBP22.33■■□□□ 1.17
SDC3-202ENST00000339394 UGP2Q16851 508 aa22.33■■□□□ 1.17
SDC3-202ENST00000339394 FBXL19Q6PCT2 694 aa22.33■■□□□ 1.17
SDC3-202ENST00000339394 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP22.33■■□□□ 1.17
SDC3-202ENST00000339394 USP30Q70CQ3 517 aa22.33■■□□□ 1.17
SDC3-202ENST00000339394 MMGT1Q8N4V1 131 aa22.33■■□□□ 1.17
SDC3-202ENST00000339394 CCHCR1Q8TD31 782 aa22.33■■□□□ 1.17
SDC3-202ENST00000339394 PIH1D2Q8WWB5 315 aa22.33■■□□□ 1.17
SDC3-202ENST00000339394 IFT43Q96FT9 208 aa22.33■■□□□ 1.17
SDC3-202ENST00000339394 TRIM51Q9BSJ1 452 aa22.33■■□□□ 1.17
SDC3-202ENST00000339394 FSD1LQ9BXM9 530 aa22.33■■□□□ 1.17
SDC3-202ENST00000339394 GOLGA6AQ9NYA3 693 aa22.33■■□□□ 1.17
SDC3-202ENST00000339394 ASIC3Q9UHC3 531 aa22.33■■□□□ 1.17
SDC3-202ENST00000339394 FBXO4Q9UKT5 387 aa22.33■■□□□ 1.17
SDC3-202ENST00000339394 A0A1W2PQ67 120 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 DLL1O00548 723 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 AXIN1O15169 862 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 EPOP01588 193 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 APRTP07741 180 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 ADRB3P13945 408 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 ADCY8P40145 1251 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 NEK3P51956 506 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 SFSWAPQ12872 951 aaKnown RBP22.33■■□□□ 1.16
SDC3-202ENST00000339394 OLIG2Q13516 323 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 LRRC73Q5JTD7 316 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 PIP5KL1Q5T9C9 394 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 AGBL4Q5VU57 503 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 KBTBD6Q86V97 674 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 FAM131CQ96AQ9 280 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 FEM1CQ96JP0 617 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 LRFN3Q9BTN0 628 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 ADGRE3Q9BY15 652 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 NCKAP1Q9Y2A7 1128 aa22.33■■□□□ 1.16
SDC3-202ENST00000339394 CCDC163A0A0D9SF12 145 aa22.32■■□□□ 1.16
SDC3-202ENST00000339394 E7EVH7 732 aa22.32■■□□□ 1.16
SDC3-202ENST00000339394 ZNF217O75362 1048 aa22.32■■□□□ 1.16
SDC3-202ENST00000339394 AP2A1O95782 977 aa22.32■■□□□ 1.16
SDC3-202ENST00000339394 AGTP01019 485 aa22.32■■□□□ 1.16
SDC3-202ENST00000339394 IGLV3-19P01714 112 aa22.32■■□□□ 1.16
SDC3-202ENST00000339394 ADRA1AP35348 466 aa22.32■■□□□ 1.16
SDC3-202ENST00000339394 TERF1P54274 439 aa22.32■■□□□ 1.16
SDC3-202ENST00000339394 CCDC15Q0P6D6 951 aa22.32■■□□□ 1.16
SDC3-202ENST00000339394 SPARCL1Q14515 664 aa22.32■■□□□ 1.16
SDC3-202ENST00000339394 RLN3Q8WXF3 142 aa22.32■■□□□ 1.16
SDC3-202ENST00000339394 FZD4Q9ULV1 537 aa22.32■■□□□ 1.16
SDC3-202ENST00000339394 PHTF1Q9UMS5 762 aa22.32■■□□□ 1.16
SDC3-202ENST00000339394 CYP8B1Q9UNU6 501 aa22.32■■□□□ 1.16
SDC3-202ENST00000339394 CACNA1IQ9P0X4 2223 aa22.31■■□□□ 1.16
SDC3-202ENST00000339394 FAM187AA6NFU0 413 aa22.31■■□□□ 1.16
SDC3-202ENST00000339394 ERI2A8K979 691 aaKnown RBP22.31■■□□□ 1.16
SDC3-202ENST00000339394 ANKRD66B4E2M5 251 aa22.31■■□□□ 1.16
SDC3-202ENST00000339394 USP12O75317 370 aa22.31■■□□□ 1.16
SDC3-202ENST00000339394 CPP00450 1065 aa22.31■■□□□ 1.16
SDC3-202ENST00000339394 PRKCGP05129 697 aa22.31■■□□□ 1.16
SDC3-202ENST00000339394 IVDP26440 423 aa22.31■■□□□ 1.16
SDC3-202ENST00000339394 TNNT3P45378 269 aaPredicted RBP22.31■■□□□ 1.16
SDC3-202ENST00000339394 RPL26P61254 145 aaKnown RBP22.31■■□□□ 1.16
SDC3-202ENST00000339394 GALNT3Q14435 633 aa22.31■■□□□ 1.16
SDC3-202ENST00000339394 ANGPT1Q15389 498 aa22.31■■□□□ 1.16
SDC3-202ENST00000339394 RANBP10Q6VN20 620 aa22.31■■□□□ 1.16
SDC3-202ENST00000339394 FAM124AQ86V42 546 aa22.31■■□□□ 1.16
SDC3-202ENST00000339394 LPCAT1Q8NF37 534 aa22.31■■□□□ 1.16
SDC3-202ENST00000339394 LRRC1Q9BTT6 524 aa22.31■■□□□ 1.16
SDC3-202ENST00000339394 FICDQ9BVA6 458 aa22.31■■□□□ 1.16
SDC3-202ENST00000339394 LRRC40Q9H9A6 602 aa22.31■■□□□ 1.16
SDC3-202ENST00000339394 RPL26L1Q9UNX3 145 aaKnown RBP22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms