RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ACE2Q9BYF1 805 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 MTMR12Q9C0I1 747 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 NLE1Q9NVX2 485 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 C3orf18Q9UK00 162 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 SSR3Q9UNL2 185 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 RUVBL1Q9Y265 456 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 FAM86C2PA6NEL3 165 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 PER1O15534 1290 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 SEC22BO75396 215 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 CAPGP40121 348 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 SNAPC2Q13487 334 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 MED22Q15528 200 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 PFKFB3Q16875 520 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 KCNV1Q6PIU1 500 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 RBM44Q6ZP01 1051 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 ELMOD2Q8IZ81 293 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 EFHBQ8N7U6 833 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF611Q8N823 705 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 OR56B2PQ8NGI1 322 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 BPIFB1Q8TDL5 484 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 PGBD4Q96DM1 585 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 FAM120BQ96EK7 910 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF251Q9BRH9 671 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 FNDC11Q9BVV2 318 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 TPK1Q9H3S4 243 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 SCPEP1Q9HB40 452 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 SENP2Q9HC62 589 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 NCOA5Q9HCD5 579 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 MGAT4BQ9UQ53 548 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 NME7Q9Y5B8 376 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 SLC9A3R1O14745 358 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 CABYRO75952 493 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 SERPINF2P08697 491 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 PGCP20142 388 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 EIF4BP23588 611 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 FMO4P31512 558 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 RBM39Q14498 530 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 ANKRD13DQ6ZTN6 518 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF551Q7Z340 670 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 RBM12BQ8IXT5 1001 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 MS4A14Q96JA4 679 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 PDLIM2Q96JY6 352 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 MTMR9Q96QG7 549 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 DMRTA2Q96SC8 542 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 UFSP2Q9NUQ7 469 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 PDE10AQ9Y233 779 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 PCDHB15Q9Y5E8 787 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 NKTRP30414 1462 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 HTR3EA5X5Y0 456 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 FAM166BA8MTA8 275 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 VPS4BO75351 444 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 NDUFS3O75489 264 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 CAPN3P20807 821 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 PSEN1P49768 467 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 NAGLUP54802 743 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 TMBIM6P55061 237 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF460Q14592 562 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 COLEC12Q5KU26 742 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 HLA-DQA1Q5Y7H0 255 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 HEATR6Q6AI08 1181 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF540Q8NDQ6 660 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 HSPA12BQ96MM6 686 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 CRYL1Q9Y2S2 319 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 NR2E1Q9Y466 385 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 CUTAO60888 179 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 IFNA5P01569 189 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 IL1AP01583 271 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 FCER2P06734 321 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 ITPKBP27987 946 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 PRKCIP41743 596 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 NAA20P61599 178 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 ATXN7L3Q14CW9 347 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 LARS2Q15031 903 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 ALDH1L2Q3SY69 923 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 RAP1GAP2Q684P5 730 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 RFWD3Q6PCD5 774 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 ASB18Q6ZVZ8 466 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 SATL1Q86VE3 508 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 PIGOQ8TEQ8 1089 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 HPSE2Q8WWQ2 592 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 RNF25Q96BH1 459 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 RNF145Q96MT1 663 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 FAM83CQ9BQN1 747 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 OPA3Q9H6K4 179 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 BEX1Q9HBH7 125 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 SPON1Q9HCB6 807 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 PAG1Q9NWQ8 432 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 USP36Q9P275 1121 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 SLC24A2Q9UI40 661 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 LAMP5Q9UJQ1 280 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 ALPPP05187 535 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 SREBF1P36956 1147 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 MDH1P40925 334 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 RAB28P51157 221 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 ROR1Q01973 937 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 ZIK1Q3SY52 487 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 C22orf42Q6IC83 251 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 DIRAS2Q96HU8 199 aa7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 RANBP3Q9H6Z4 567 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-201ENST00000313860 SAE1Q9UBE0 346 aaPredicted RBP7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms