RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 SLITRK1Q96PX8 696 aa11□□□□□ -0.65
LSM3-201ENST00000306024 CCDC90BQ9GZT6 254 aa11□□□□□ -0.65
LSM3-201ENST00000306024 LHX5Q9H2C1 402 aa11□□□□□ -0.65
LSM3-201ENST00000306024 WDR41Q9HAD4 459 aa11□□□□□ -0.65
LSM3-201ENST00000306024 MRGBPQ9NV56 204 aa11□□□□□ -0.65
LSM3-201ENST00000306024 PCDH10Q9P2E7 1040 aa11□□□□□ -0.65
LSM3-201ENST00000306024 GNPTGQ9UJJ9 305 aa11□□□□□ -0.65
LSM3-201ENST00000306024 PCDHGB4Q9UN71 923 aa11□□□□□ -0.65
LSM3-201ENST00000306024 PCDHGB5Q9Y5G0 923 aa11□□□□□ -0.65
LSM3-201ENST00000306024 F8VP50 259 aa11□□□□□ -0.65
LSM3-201ENST00000306024 TLL1O43897 1013 aa11□□□□□ -0.65
LSM3-201ENST00000306024 TIMP1P01033 207 aa11□□□□□ -0.65
LSM3-201ENST00000306024 NCAM1P13591 858 aa11□□□□□ -0.65
LSM3-201ENST00000306024 RFC2P35250 354 aa11□□□□□ -0.65
LSM3-201ENST00000306024 SERPINB9P50453 376 aa11□□□□□ -0.65
LSM3-201ENST00000306024 INCA1Q0VD86 236 aa11□□□□□ -0.65
LSM3-201ENST00000306024 MAMLD1Q13495 774 aa11□□□□□ -0.65
LSM3-201ENST00000306024 VEPH1Q14D04 833 aa11□□□□□ -0.65
LSM3-201ENST00000306024 ZBED5Q49AG3 693 aa11□□□□□ -0.65
LSM3-201ENST00000306024 ALKAL1Q6UXT8 129 aa11□□□□□ -0.65
LSM3-201ENST00000306024 CDHR3Q6ZTQ4 885 aa11□□□□□ -0.65
LSM3-201ENST00000306024 TMEM26Q6ZUK4 368 aa11□□□□□ -0.65
LSM3-201ENST00000306024 CNDP1Q96KN2 507 aa11□□□□□ -0.65
LSM3-201ENST00000306024 LENG8Q96PV6 779 aaPredicted RBP11□□□□□ -0.65
LSM3-201ENST00000306024 SYT11Q9BT88 431 aa11□□□□□ -0.65
LSM3-201ENST00000306024 TTPALQ9BTX7 342 aa11□□□□□ -0.65
LSM3-201ENST00000306024 TPK1Q9H3S4 243 aa11□□□□□ -0.65
LSM3-201ENST00000306024 PCDHGC3Q9UN70 934 aa11□□□□□ -0.65
LSM3-201ENST00000306024 DRG1Q9Y295 367 aaKnown RBP11□□□□□ -0.65
LSM3-201ENST00000306024 WDR81Q562E7 1941 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 SDR42E2A6NKP2 422 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 PSMD11O00231 422 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 KLF11O14901 512 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 CLOCKO15516 846 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 AVILO75366 819 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 EIF2S1P05198 315 aaKnown RBP10.99□□□□□ -0.65
LSM3-201ENST00000306024 MYL4P12829 197 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 UNGP13051 313 aaPredicted RBP10.99□□□□□ -0.65
LSM3-201ENST00000306024 TFE3P19532 575 aaPredicted RBP10.99□□□□□ -0.65
LSM3-201ENST00000306024 SLC11A1P49279 550 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 SULT1E1P49888 294 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 THOP1P52888 689 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 USP41Q3LFD5 358 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 FAM156AQ8NDB6 213 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 DDX1Q92499 740 aaKnown RBP10.99□□□□□ -0.65
LSM3-201ENST00000306024 BADQ92934 168 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 ZNF512Q96ME7 567 aaPredicted RBP10.99□□□□□ -0.65
LSM3-201ENST00000306024 B3GNT5Q9BYG0 378 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 ULBP1Q9BZM6 244 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 DHX35Q9H5Z1 703 aaKnown RBP10.99□□□□□ -0.65
LSM3-201ENST00000306024 HMG20AQ9NP66 347 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 MRPL40Q9NQ50 206 aaKnown RBP10.99□□□□□ -0.65
LSM3-201ENST00000306024 SACM1LQ9NTJ5 587 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 PRPF19Q9UMS4 504 aaKnown RBP10.99□□□□□ -0.65
LSM3-201ENST00000306024 DLGAP3O95886 979 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 GRK2P25098 689 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 ARL4AP40617 200 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 RAD23AP54725 363 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 CSE1LP55060 971 aaKnown RBP10.99□□□□□ -0.65
LSM3-201ENST00000306024 CDKL1Q00532 357 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 PRPSAP1Q14558 356 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 MTX3Q5HYI7 312 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 VARS2Q5ST30 1063 aaKnown RBP10.99□□□□□ -0.65
LSM3-201ENST00000306024 FAM91A1Q658Y4 838 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 PMF1Q6P1K2 205 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 ARCQ7LC44 396 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 DNAJC5GQ8N7S2 189 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 PCED1BQ96HM7 432 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 COQ7Q99807 217 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 SH3GL1Q99961 368 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 FAM124BQ9H5Z6 455 aaPredicted RBP10.99□□□□□ -0.65
LSM3-201ENST00000306024 ELAC1Q9H777 363 aaKnown RBP10.99□□□□□ -0.65
LSM3-201ENST00000306024 PCDHB8Q9UN66 801 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 ARID2Q68CP9 1835 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 KCNN4O15554 427 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 GLRA3O75311 464 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 MFN2O95140 757 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 TCEA1P23193 301 aaKnown RBP10.99□□□□□ -0.65
LSM3-201ENST00000306024 NDST2P52849 883 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 CDH6P55285 790 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 PGS1Q32NB8 556 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 FAM183BPQ6ZVS7 135 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 ANKS3Q6ZW76 656 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 KBTBD6Q86V97 674 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 TTC30AQ86WT1 665 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 DSELQ8IZU8 1212 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 PHTF2Q8N3S3 785 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 ATAD1Q8NBU5 361 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 SLC7A14Q8TBB6 771 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 ATP6V1E2Q96A05 226 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 SUSD3Q96L08 255 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 HSFY1Q96LI6 401 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 RTKNQ9BST9 563 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 DUSP16Q9BY84 665 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.99□□□□□ -0.65
LSM3-201ENST00000306024 SPG21Q9NZD8 308 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 MGAMO43451 1857 aa10.99□□□□□ -0.65
LSM3-201ENST00000306024 A0A1B0GTW7 788 aa10.98□□□□□ -0.65
LSM3-201ENST00000306024 ASNA1O43681 348 aa10.98□□□□□ -0.65
LSM3-201ENST00000306024 ERBB2P04626 1255 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms