RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 HERC3Q15034 1050 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 ANKRD34AQ69YU3 496 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 IQSEC1Q6DN90 963 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 SLFN12LQ6IEE8 588 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 ZYG11AQ6WRX3 759 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 USP43Q70EL4 1123 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 SLC22A16Q86VW1 577 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 CENPLQ8N0S6 344 aaPredicted RBP13.58□□□□□ -0.24
SKA3-201ENST00000298260 MFSD2AQ8NA29 543 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 SPATA13Q96N96 652 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 SEZ6LQ9BYH1 1024 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 TP63Q9H3D4 680 aaPredicted RBP13.58□□□□□ -0.24
SKA3-201ENST00000298260 PXMP2Q9NR77 195 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 AGPAT4Q9NRZ5 378 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 TRIM64A6NGJ6 449 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 CLDN25C9JDP6 229 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 UBDO15205 165 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 HOXC6P09630 235 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 CXCL8P10145 99 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 AXLP30530 894 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 MAGEA12P43365 314 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 BAATQ14032 418 aaPredicted RBP13.58□□□□□ -0.24
SKA3-201ENST00000298260 VPS26BQ4G0F5 336 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 NCBP2-AS2Q69YL0 99 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 CRTC3Q6UUV7 619 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 ZNF354CQ86Y25 554 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 CEP97Q8IW35 865 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 TXNDC5Q8NBS9 432 aaKnown RBP13.58□□□□□ -0.24
SKA3-201ENST00000298260 SEPT8Q92599 483 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 ZMAT2Q96NC0 199 aaKnown RBP13.58□□□□□ -0.24
SKA3-201ENST00000298260 CSPG4P5Q96PW8 444 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 KCTD15Q96SI1 283 aaPredicted RBP13.58□□□□□ -0.24
SKA3-201ENST00000298260 FUNDC2Q9BWH2 189 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 SNX25Q9H3E2 840 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 VRTNQ9H8Y1 702 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 TMEM181Q9P2C4 612 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 SIX4Q9UIU6 781 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 ZNF229Q9UJW7 825 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 TLK1Q9UKI8 766 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 NUDT5Q9UKK9 219 aa13.58□□□□□ -0.24
SKA3-201ENST00000298260 ZNF638Q14966 1978 aaKnown RBP13.57□□□□□ -0.24
SKA3-201ENST00000298260 ZCWPW2A0A1B0GU75 182 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 TRIM64BA6NI03 449 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 B4GALT5O43286 388 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 MED7O43513 233 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 HTR1BP28222 390 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 SDC4P31431 198 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 TGFBR1P36897 503 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 CAPGP40121 348 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 POU5F1BQ06416 359 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 PPP1R8Q12972 351 aaKnown RBP13.57□□□□□ -0.24
SKA3-201ENST00000298260 CTBP1Q13363 440 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 CLPPQ16740 277 aaPredicted RBP13.57□□□□□ -0.24
SKA3-201ENST00000298260 CYP51A1Q16850 503 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 BOLA3Q53S33 107 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 ZNF667Q5HYK9 610 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 PID1Q7Z2X4 250 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 NDRG1Q92597 394 aaKnown RBP13.57□□□□□ -0.24
SKA3-201ENST00000298260 FAR2Q96K12 515 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 QKIQ96PU8 341 aaKnown RBP eCLIP13.57□□□□□ -0.24
SKA3-201ENST00000298260 ZNF347Q96SE7 839 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 C1QTNF1Q9BXJ1 281 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 TDRD1Q9BXT4 1180 aaKnown RBP13.57□□□□□ -0.24
SKA3-201ENST00000298260 PDZD7Q9H5P4 517 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 PTPRHQ9HD43 1115 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 CCM2LQ9NUG4 571 aaPredicted RBP13.57□□□□□ -0.24
SKA3-201ENST00000298260 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.57□□□□□ -0.24
SKA3-201ENST00000298260 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.57□□□□□ -0.24
SKA3-201ENST00000298260 SCHIP1Q9P0W5 487 aaPredicted RBP13.57□□□□□ -0.24
SKA3-201ENST00000298260 KLHL3Q9UH77 587 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 TSPAN16Q9UKR8 245 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 MRPL42Q9Y6G3 142 aaKnown RBP13.57□□□□□ -0.24
SKA3-201ENST00000298260 NRXN2Q9P2S2 1712 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 NR5A2O00482 541 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 MSI1O43347 362 aaKnown RBP13.57□□□□□ -0.24
SKA3-201ENST00000298260 NRP2O60462 931 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 GPC4O75487 556 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 GABBR2O75899 941 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 NFICP08651 508 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 SLC35E2BP0CK96 405 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 NAT1P18440 290 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 TGM1P22735 817 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 FASP25445 335 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 BMPR1AP36894 532 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 CCT8P50990 548 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 STX5Q13190 355 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 ARL13BQ3SXY8 428 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 DACT2Q5SW24 774 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 UBE2UQ5VVX9 321 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 NIPA1Q7RTP0 329 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 FAM131BQ86XD5 332 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 ZNF567Q8N184 647 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 PELI3Q8N2H9 469 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.57□□□□□ -0.24
SKA3-201ENST00000298260 KHSRPQ92945 711 aaKnown RBP eCLIP13.57□□□□□ -0.24
SKA3-201ENST00000298260 MORF4L1Q9UBU8 362 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 WDR81Q562E7 1941 aa13.57□□□□□ -0.24
SKA3-201ENST00000298260 AP3B1O00203 1094 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 HCRTO43612 131 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 ITGB3P05106 788 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms